Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g03321 ATGGGTTGCGTGTTCGGGAAGCCGTCCGGTAACGAAGCTCAGAGCCGTCACCGGAGCAAACAGAGAAGCTCTGCTCGCGAAGCAAGCGATAATAGTGATATTAATAATGCCGTTAGGGTTCGGGAAAAGCAGAGGAACCGCCGGAACTCCGGCGGCGATGTTCCGGTAAGCCTTCCGGCACCGGAACGCCGGAAGCCGAGGCTCGATCCGTTCGCGGTTACTCAGCAGGGATGGCCGTCGTGGCTTATGGCCGTCGCCGGCGAAGCAATCGGCGATTGGACTCCTCGCCGCGCCAACACCTTTGAGAAGCTCGCTAAGATTGGGCAAGGGACTTATAGCAATGTGTATAAAGCAAGGGACCTTTTGAGTGGAAAGATTGTGGCTTTGAAGAAAGTTAGGTTTGATAATTTGGAACCTGAGAGTGTGAAGTTCATGGCTAGAGAGATTCTTGTTCTGAGGAAGCTTGATCATCCAAATGTTGTGAAGCTTGAGGGATTGGTCACTTCAAGAATGTCTTGCAGCCTTTACTTGGTTTTTGAGTATATGGAACATGATCTTGCAGGTCTTGCAGCTGGTCAAGGTGTCAAGTTCACTGAACCTCAGGTCAAATGCTTTATGAAGCAATTGCTCTCAGGCCTTGAGCATTGCCACAGCCGAGGTGTATTGCACCGTGATATTAAGGGTTCCAATCTGCTTATTGACAACGAAGGAATCCTTAAAATTGCAGATTTTGGATTGGCAACTTTCTTTGACCCTAAGCAGAAGCAGGTCTTGACGAGCAGAGTTGTAACTCTCTGGTATCGTCCCCCTGAGCTGCTTCTTGGGGCCACATTTTATGGTGTTGGTGTTGACCTTTGGAGTGCTGGTTGTATCTTGGCAGAGCTGCTTGCTGGGAAGCCAATCATGCCTGGCCGGACAGAGGTTGAACAACTGCACAAAATATTTAAGTTATGTGGCTCTCCATCTGAGGAATATTGGAAGAAATATAAATTGCCAAATGCTACAATTTTTAAGCCACAGCAGCCGTATAAACGTTGCATCACAGAAACTTTCAAGGATTTTCCTCCATCTTCAATACCCTTGATTGAAACTCTACTTGCAATAGATCCTGATGGTCGTGGCACTGCCTCAGCTGCTCTAAATAGCGAATTCTTTACAACTGAGCCCTATGCTTGTGAACCTTCGAGTTTACCGAAGTATCCTCCCAGCAAAGAACTGGATGTAAAACTAAGAGATGAAGAAGCAAGAAGGTCTCCTATTCTTTCCTACATTGAAAATGTTGGATTGATTTTTCCTAGTTTCTCATTTTTGGCTTTGATTTCATTCAGGCAAAAAGCTCTACATGGAAAGGCTAATGATGGTGCCAAAAGAGTCAGAGCACGCGAGCGTGGTCGAGCTATTCCAGCCCCTGAAGCTAATGCAGAGATCCAAACAAACTTAGATAGGTGGAGAGTAGTGAACCACACAAATGCAAAGAGCAAGAGTGAGAAATTTCCACCCCCTCATCAAGATGGTGCTGTTGGATATCCACAAGATGCATCTTCACAAAAAGGGCCTGTTTCATTTGGTGCCACTGACACTACTTCCTTTGGCTCAGAGACATTTGATTCTAAACAATCTCATCATGATGGAACTCATAGAGGTAGGAAAACCAGAAAAGAAGACTCAAACACTGCCTCATCATGGAAATTCATGCGTCCATTCAAACCATCAACAGTTGGTCTTTCAATGGATTTATTATTTAGGAGCAAATAA 1755 0.4558 MGCVFGKPSGNEAQSRHRSKQRSSAREASDNSDINNAVRVREKQRNRRNSGGDVPVSLPAPERRKPRLDPFAVTQQGWPSWLMAVAGEAIGDWTPRRANTFEKLAKIGQGTYSNVYKARDLLSGKIVALKKVRFDNLEPESVKFMAREILVLRKLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAAGQGVKFTEPQVKCFMKQLLSGLEHCHSRGVLHRDIKGSNLLIDNEGILKIADFGLATFFDPKQKQVLTSRVVTLWYRPPELLLGATFYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKYKLPNATIFKPQQPYKRCITETFKDFPPSSIPLIETLLAIDPDGRGTASAALNSEFFTTEPYACEPSSLPKYPPSKELDVKLRDEEARRSPILSYIENVGLIFPSFSFLALISFRQKALHGKANDGAKRVRARERGRAIPAPEANAEIQTNLDRWRVVNHTNAKSKSEKFPPPHQDGAVGYPQDASSQKGPVSFGATDTTSFGSETFDSKQSHHDGTHRGRKTRKEDSNTASSWKFMRPFKPSTVGLSMDLLFRSK 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g03321 584 ProSiteProfiles Protein kinase domain profile. 101 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip08g03321 584 MobiDBLite consensus disorder prediction 13 27 - -
Aip08g03321 584 SMART serkin_6 101 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip08g03321 584 MobiDBLite consensus disorder prediction 536 559 - -
Aip08g03321 584 ProSitePatterns Protein kinases ATP-binding region signature. 107 130 IPR017441 GO:0005524
Aip08g03321 584 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 68 421 - -
Aip08g03321 584 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 447 549 - -
Aip08g03321 584 CDD STKc_CDK9_like 101 385 - -
Aip08g03321 584 MobiDBLite consensus disorder prediction 514 535 - -
Aip08g03321 584 ProSitePatterns Serine/Threonine protein kinases active-site signature. 221 233 IPR008271 GO:0004672|GO:0006468
Aip08g03321 584 Gene3D Transferase(Phosphotransferase) domain 1 184 422 - -
Aip08g03321 584 MobiDBLite consensus disorder prediction 490 563 - -
Aip08g03321 584 Gene3D Phosphorylase Kinase; domain 1 88 183 - -
Aip08g03321 584 MobiDBLite consensus disorder prediction 1 69 - -
Aip08g03321 584 Pfam Protein kinase domain 101 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip08g03321 584 PANTHER CELL DIVISION PROTEIN KINASE 68 421 - -
Aip08g03321 584 PANTHER CELL DIVISION PROTEIN KINASE 447 549 - -
Aip08g03321 584 SUPERFAMILY Protein kinase-like (PK-like) 95 390 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g03321 Aip-Chr8 124406411 124410268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g03321 93 418 Core Cell Cycle Gene Families AT5G10270 51.462 2.41e-115 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Aip08g03321 Pkinase 2.7e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g03321 K08819 - gmx:100807756 944.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g03321 08 124406411 124410268 Aip08g03321 08 124406411 124410268 ECH