Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g03315 ATGATGGCTGCTTTTTCTTCATACCAATATCACCCTAATTTTCTTCCTCTTGACTCTACATTCTTCCAAAACCTAAACACAACAACAACAACAACTAGTGTTCCTACTCTTCATCAACATCATCATCATCAAGAAGAAGGGTTCTCTGATTTCAATAATAATACTATAAGCTGTGTTGATCAAATAAGCTCTTGCAACAAGGTTTCATTCATAAGTAATAGTGACAATGAGCCTTCAAATGTTTCTGTCACTACAAGAAACAACCTTAGTCCTCAATCTTCCATGGTAGTTGATAAGCTTGAAATTGGTGAACAAGTTACTCAAAAGGTCACTACTATGGAGAGGAAGAGAAGAACTAGACATGGATCTTCTCCCATCACTACTAATCCCCAATCTAAGGATGGAACAACAAGGAAGAGAATGAGGAAGAGCAATAATAATAGTGGCGGTGTGGTGAAGAATAAAGAAGATGAGAAAGCAAAAGATAATAATAATAATAATAATAATAAGAAAAAAGATAGTAATGAAGAAGAGGAGCCACCAAAAGGGTATATCCACGTCAGAGCAAGAAGGGGTCAAGCTACTGATAGCCACAGCCTTGCTGAAAGGAAAATAAGTGAAAGGATGAAGATGTTACAGCGGCTTGTGCCAGGCTGTGATAAGGTGACTGGGAAGGCCCTTATGTTGGATGAAATAATCAATTATGTTCAGTCTTTACAGAATCAAGTAGAGTTCTTGTCATTGAAGCTTGCTTCGGTGAGTCCTATTTTCTATGACATGGCAACAGATCTAGACACTACTCTCTTGGTTAGACCTGAGAAGAGCAAAGACAAAAATTTCTTCATCCATATGAATTCATCAACAACAACAACTTATGTTCCTTTCATTAGTATTAAATTCACACCAACAATGCTAGCTACAAACATGTTGGATTCAGCATTTACAGAGGGGGAGGAAGAGGGGGCGGCGGAAGACGAGCAGGAGGAGGTTGGGGCAGCCGAGGACGAGCAGGAGGAGGTAGGGGCGGCGGAGGATGGACATGGATATTCGCAAATTCCGGTGGAAGAAATTGTAGAAATTCAGCTTCTAGATTTTGGATCTTATTACTAA 1110 0.3955 MMAAFSSYQYHPNFLPLDSTFFQNLNTTTTTTSVPTLHQHHHHQEEGFSDFNNNTISCVDQISSCNKVSFISNSDNEPSNVSVTTRNNLSPQSSMVVDKLEIGEQVTQKVTTMERKRRTRHGSSPITTNPQSKDGTTRKRMRKSNNNSGGVVKNKEDEKAKDNNNNNNNKKKDSNEEEEPPKGYIHVRARRGQATDSHSLAERKISERMKMLQRLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSLKLASVSPIFYDMATDLDTTLLVRPEKSKDKNFFIHMNSSTTTTYVPFISIKFTPTMLATNMLDSAFTEGEEEGAAEDEQEEVGAAEDEQEEVGAAEDGHGYSQIPVEEIVEIQLLDFGSYY 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g03315 369 Gene3D - 190 254 IPR036638 GO:0046983
Aip08g03315 369 MobiDBLite consensus disorder prediction 152 200 - -
Aip08g03315 369 CDD bHLH_AtBPE_like 183 264 - -
Aip08g03315 369 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 189 239 IPR011598 GO:0046983
Aip08g03315 369 MobiDBLite consensus disorder prediction 73 95 - -
Aip08g03315 369 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 2 274 IPR024097 GO:0006355
Aip08g03315 369 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 191 253 IPR036638 GO:0046983
Aip08g03315 369 Coils Coil 152 172 - -
Aip08g03315 369 MobiDBLite consensus disorder prediction 316 350 - -
Aip08g03315 369 SMART finulus 199 245 IPR011598 GO:0046983
Aip08g03315 369 PANTHER BASIC HELIX LOOP HELIX PROTEIN BHLH8 2 274 - -
Aip08g03315 369 MobiDBLite consensus disorder prediction 73 200 - -
Aip08g03315 369 MobiDBLite consensus disorder prediction 317 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g03315 Aip-Chr8 124343041 124346252 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g03315 121 269 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 58.170 1.90e-50 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g03315 - - aip:107614220 478.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g03315 08 124343041 124346252 Aip08g03315 08 124343041 124346252 ECH