Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g03308 ATGGCATCATCGGAGGCAGCAACAACCATCAAGGTTAATGGTAATTCTCACAACAATAACAACAACAACAACATCATCAACAACAACTCTTCGGAGCTGAACAACAATGTTCATTCTTCATCTTCTTCCTCCACCTCACCCAAAGACGCGGAAGCTGCACTTTACAGGGAGCTATGGCATGCGTGTGCAGGTCCTCTTGTTACAGTTCCAAGAGAAGGAGAAAGAGTTTTCTATTTCCCTCAGGGACACATAGAACAGGTGGAGGCGTCAACAAATCAGGTGGCTGACCAACACATGCCTGTGTACGATCTTCCTTCCAAGATCCTTTGTCGGGTCATCAACGTGCAGCTCAAGGCGGAGCCCGACACGGATGAGGTGTTTGCCCAGATTACCTTGCTTCCGGAACAAAATCAAGATGAGAATGCGGTCGAGAAAGAGCCTCCACTGCCACCACCACCGCGCTTCCATGTACATTCGTTCTGTAAGACGCTGACCGCATCTGATACAAGCACCCATGGTGGGTTTTCCGTTCTGAGGCGACATGCTGACGAGTGCCTTCCTCCCCTGGATATGTCAAAGCAGCCGCCTACCCAGGAATTGGTGGCGAAGGATTTGCATGCGAATGAATGGCGATTTAGGCACATATTCCGAGGTCAACCTCGGAGGCACTTGCTTCAAAGTGGCTGGAGTGTTTTTGTTAGCTCCAAGAGGCTAGTTGCTGGGGATGCCTTCATATTCTTAAGAGGTGAGAATGGGGAGCTTCGTGTGGGCGTACGGAGAGCGATGAGACAGCAGGGGAATGTCCCATCCTCGGTTATTTCTAGCCACAGTATGCATCTTGGGGTTCTTGCAACTGCTTGGCATGCCATCTTGACAGGAACCATATTCACTGTTTATTATAAACCGAGGACTAGTCCTGCTGAGTTCATTGTTCCATACGACCAATATATGGAATCTCTAAAGAATAATTACACCATAGGAATGCGGTTTAAAATGAGGTTTGAAGGTGAAGAGGCTCCGGAACAGAGGTTTACTGGTACCATTGTTGGAATAGAAGATGCTGACTCAAAAAGGTGGCCTGAATCAAAATGGAGATGCCTCAAGGTGAGATGGGATGAAACATCTAACATTCCCCGTCCAGAGAGGGTTTCCCCTTGGAAAATAGAGCCTGCTCTTGCTCCTCCAGCTCTGAACCCTCTTTCAATGCCCAGGGCTAAAAGGCCTCGATCTAATGTACCTAATGTACCAATTCAATCATCCCAAGATTCTTCTGTTCTAACTCGAGAAGCATCGTCTAAAGTAAGCGCAGACCCTTCACCAGCAAATGGATTCCCAAGGGTCTTGCAAGGTCAAGAATTCTCGACCTTGCGTGGCAATTTCGCAGAAAGTAACGAGTCCGACACAGCTGAGAAATCTGTTGTTTGGCCACCTGTAGATGATGAGAAAGTTGATGTTGTTTCAATGTCACGGAGGTACGGTTCAGAGAACTGGATGTCAATGGGAAGGCCTGACACGTCCTATTCAGATCTTCTTTCAGGCTTTGGGGCCAGCGGAGATCCTTCCCATCCATCCTTGGGAGATCAAATGGGTGGACCTGTAGCCTATTCTGCCAGAAAGCATGTGTTAGATCACGAAGGCAAACTTAATGTGCATCATCCTTGGCCAGCGATGTCCTCAGGTTTTTCACTAAACCTCTTGGAGCCTAGTACAAAAGAATCTCCACGTGGCAGCGAAACACCTTACCAAGCTCGAGGGAATTTGAGGTACGGCCCATTCAGTGAATATCCGGTCATTCATATTAACAAAGTTGAGCATCCACATGGAAAGTTGATGCTGCCACCACCCCCAACTCAATACGAGAGTCCTTGTTCAAGAGACCTTATGTCCAAACCAATGTCAGCGAAAACATATGAGACGGCGAAACCAAAAGAAGGTGACTGTAAGCTATTTGGCATCTCACTTATCAGTAGCCCTACTGCTGCACCGGAGCCTTCTGTATCACATGGAAGTGGAACGACTGAGCCAGCTGGTCAAGCACATCTCAAATCACACCACCAACGCACTTCTGAAAATGATCAGAAAACAGAACAATCAAAGGGCTTGAAATCGGCAGATGGTCAAGTTATTGTTGATGACCATGACAAGCCATCAAAAACTTCCCAGGTGCATCTTAAAGATGGTCAGGCCAAACCACCAAGCAGCTCAGCTAGGAGTTGCACTAAGGTCCACAAGAAGGGGATTGCGCTTGGTAGGTCTGTGGATCTGACAAAGTACAGCAACTATGATGAATTGGTTGCTGAATTGGATCAGCTGTTTGAATTTGGAGGTGAATTAATGTCAACAAGAAAGGATTGGCTTATTGTCTACACTGATAATGAGGGTGACATGATGCTCGTTGGGGACGATCCATGGCAGGAGTTCTGTGCCATGGTTCGCAAAATTTATATCTACCCGAAAGAGGAGATTCAAAAGATGAGCCCAGGTACCTTAAGTTCAAGAAATGAAGAGAATCATTCAGCTAGTGAAGGAACCGAGGCAAAAGAAGTCAAAAGTCAGCTGCACCAGAAGTTAAATTCAGAAAGTGTGGCTACGGTCCACGATAATTAG 2607 0.4691 MASSEAATTIKVNGNSHNNNNNNNIINNNSSELNNNVHSSSSSSTSPKDAEAALYRELWHACAGPLVTVPREGERVFYFPQGHIEQVEASTNQVADQHMPVYDLPSKILCRVINVQLKAEPDTDEVFAQITLLPEQNQDENAVEKEPPLPPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHANEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAILTGTIFTVYYKPRTSPAEFIVPYDQYMESLKNNYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDADSKRWPESKWRCLKVRWDETSNIPRPERVSPWKIEPALAPPALNPLSMPRAKRPRSNVPNVPIQSSQDSSVLTREASSKVSADPSPANGFPRVLQGQEFSTLRGNFAESNESDTAEKSVVWPPVDDEKVDVVSMSRRYGSENWMSMGRPDTSYSDLLSGFGASGDPSHPSLGDQMGGPVAYSARKHVLDHEGKLNVHHPWPAMSSGFSLNLLEPSTKESPRGSETPYQARGNLRYGPFSEYPVIHINKVEHPHGKLMLPPPPTQYESPCSRDLMSKPMSAKTYETAKPKEGDCKLFGISLISSPTAAPEPSVSHGSGTTEPAGQAHLKSHHQRTSENDQKTEQSKGLKSADGQVIVDDHDKPSKTSQVHLKDGQAKPPSSSARSCTKVHKKGIALGRSVDLTKYSNYDELVAELDQLFEFGGELMSTRKDWLIVYTDNEGDMMLVGDDPWQEFCAMVRKIYIYPKEEIQKMSPGTLSSRNEENHSASEGTEAKEVKSQLHQKLNSESVATVHDN 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g03308 868 Pfam AUX/IAA family 782 824 IPR033389 -
Aip08g03308 868 Pfam AUX/IAA family 721 773 IPR033389 -
Aip08g03308 868 MobiDBLite consensus disorder prediction 680 699 - -
Aip08g03308 868 Pfam Auxin response factor 286 368 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Aip08g03308 868 SUPERFAMILY CAD & PB1 domains 738 814 - -
Aip08g03308 868 Gene3D - 157 262 IPR015300 -
Aip08g03308 868 MobiDBLite consensus disorder prediction 826 868 - -
Aip08g03308 868 MobiDBLite consensus disorder prediction 722 740 - -
Aip08g03308 868 ProSiteProfiles B3 DNA-binding domain profile. 160 262 IPR003340 GO:0003677
Aip08g03308 868 PANTHER AUXIN RESPONSE FACTOR 2 40 844 - -
Aip08g03308 868 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 40 844 IPR044835 GO:0003677|GO:0006355|GO:0009725
Aip08g03308 868 MobiDBLite consensus disorder prediction 1 48 - -
Aip08g03308 868 Gene3D - 323 393 - -
Aip08g03308 868 SUPERFAMILY DNA-binding pseudobarrel domain 156 289 IPR015300 -
Aip08g03308 868 CDD B3_DNA 158 260 IPR003340 GO:0003677
Aip08g03308 868 MobiDBLite consensus disorder prediction 706 721 - -
Aip08g03308 868 MobiDBLite consensus disorder prediction 658 741 - -
Aip08g03308 868 MobiDBLite consensus disorder prediction 412 438 - -
Aip08g03308 868 SMART B3_2 160 262 IPR003340 GO:0003677
Aip08g03308 868 MobiDBLite consensus disorder prediction 838 854 - -
Aip08g03308 868 Gene3D - 733 826 - -
Aip08g03308 868 ProSiteProfiles PB1 domain profile. 737 819 IPR000270 GO:0005515
Aip08g03308 868 Pfam B3 DNA binding domain 160 261 IPR003340 GO:0003677
Aip08g03308 868 MobiDBLite consensus disorder prediction 658 679 - -
Aip08g03308 868 MobiDBLite consensus disorder prediction 394 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g03308 Aip-Chr8 124195721 124201058 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g03308 1 859 B3 DNA Binding Superfamily AT5G62000 62.955 0.0 1072
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Aip08g03308 AUX_IAA 2.1e-12 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g03308 - - aip:107612759 1682.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g03308 08 124195721 124201058 Aip08g03308 08 124195721 124201058 ECH
Aip03g03311 03 108925012 108929928 Aip08g03308 08 124195721 124201058 PCT
Aip08g03308 08 124195721 124201058 Aip01g01718 01 70644571 70647052 PCT