Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g03307 ATGATTGTTGTTCTTGATTATCAAGGTGCCAACTCGCAGAAGAGTCATCATACCTTTGATAATTCTTCTGGCATTTTGAGTCGGTTGATATCTTCACATATTCATGGAGCCAATGGTGAAAAGCCCGTTGCTCGTCATACGagctctagatccgaaaggtcaagagttcTTCGAAGGGTTAATGGGAATGACAAATGTGCTGATTGTGGTAAATCTGAACCAGACTGGGCATCCTTAAACCTTGGCATCCTTGTATGCATTGAATGTTCTGGTGTTCATCGAAATCTTGGTGTACATATATCCAAAGTAAGATCACTGACACTTGATGTGAAAGTATGGGATTCCTCAGTTTTAAGCATGTTTCAATCACTTGGCAATCTCTTTGCAAACTCAGTTTGGGAGGAGTTATTGCATTAA 417 0.3717 MIVVLDYQGANSQKSHHTFDNSSGILSRLISSHIHGANGEKPVARHTSSRSERSRVLRRVNGNDKCADCGKSEPDWASLNLGILVCIECSGVHRNLGVHISKVRSLTLDVKVWDSSVLSMFQSLGNLFANSVWEELLH 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g03307 138 PRINTS HIV Rev interacting protein signature 105 126 IPR001164 GO:0005096
Aip08g03307 138 PRINTS HIV Rev interacting protein signature 63 82 IPR001164 GO:0005096
Aip08g03307 138 PRINTS HIV Rev interacting protein signature 82 99 IPR001164 GO:0005096
Aip08g03307 138 SUPERFAMILY ArfGap/RecO-like zinc finger 52 136 IPR037278 -
Aip08g03307 138 SMART arf_gap_3 51 138 IPR001164 GO:0005096
Aip08g03307 138 Gene3D Arf GTPase activating protein 38 138 IPR038508 -
Aip08g03307 138 PANTHER CENTAURIN/ARF 14 47 IPR045258 GO:0005096
Aip08g03307 138 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD1 55 138 - -
Aip08g03307 138 ProSiteProfiles ARF GTPase-activating proteins domain profile. 51 138 IPR001164 GO:0005096
Aip08g03307 138 PANTHER CENTAURIN/ARF 55 138 IPR045258 GO:0005096
Aip08g03307 138 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD1 14 47 - -
Aip08g03307 138 CDD ArfGap 57 137 - -
Aip08g03307 138 Pfam Putative GTPase activating protein for Arf 54 135 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g03307 Aip-Chr8 124146667 124148318 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g03307 49 137 C2H2 Transcription Factor Family AT4G05330 51.111 9.04e-22 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g03307 K12489 - gmx:100792517 164.851
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g03307 08 124146667 124148318 Aip08g03307 08 124146667 124148318 ECH