Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g03304 ATGCCTCTCGTTTCTTCTCTTTTCTCTTTTGATCCAATAACACAACAACATCAACATCCTTCCAGCATGTATTTCGCCAAATTACAGGACTCTCCCATGTTCCGCCAACAGCTGCAGACCATGGAAGAAGGTGCAGAATCGTTACGTGCCAGATGCTGGAGATTCTACAAAGGGTGTAAAAAGTACACGGATGGGCTTTTAGATGCATGTGATGGAGACTTCACCTTTGCAAGTGCCCTCGAAAATTTTGGGGGAGAACATTCTGATCCTTTATTTGTAACTTTGGGAGGGCCTGTTATGACCAAATTCTCTATGGCTTTGAGAGACATCAGTACATTCAAGGACGCTCTTAGGACACAGGTGGAGCAAATGTTGACTGACCGTCTACTTCACATTTACAATGTCGAAATAATGGATGTCAAGGAAGCTCGAAAGCGTTTTGACAAGGCTTCCATTGCATATGACCAGGCACGGGAGAAGTTTATGTCATTGAGGAAAAGTACTAGGCAGGATATCGTCATTGCAATAGAGGAGGAATTGCACAATGCAAGAAGCTCATTTGAAGAAGCCCGTTTCAATCTGATTAGTGCTCTTCACAATGTCGAGGCCAAAAAAAGATTCGAGTTTTTGGAGGCTGTCACTGGAGTAATGGATGCTCATCTTCAATATTTTCGACAGGGATATGAACTACTACATCAGTTGGAGCCCTTCATTGTTGAGGTTTTGTCATATGTACAAAAAGCAAGGGAAAGTCACAATGAGGAGCAGGTTTCTCTATTTGAAAGAATGATAGAGTACAAGCAACTTGTCCATCAAGAAAGTAAGTTGTCCTTGAAGGGATTTTATGATTCTCCTGGTCGAGACTCTCCATTTTCTAGGATATCAAGTGATGTGTTAGATGCAGTAACAGAATCTGTCAAAACCGGAAAGGTTCAAACCATTCGAGAAGGGTTTCTCTCAAAACGATCCAGCAATTTAAGAGGCGATTGGAAGAGAAGGTATTTTGTTCTTGATAGTCGCGGAATGCTTTACTACTTTCGCAAACCATTGACTCTCTTCCATGGTGCCAACTCACAGAAGAGTCATCATACCTTTGATAATTCTTCTGGCATTTTGAGTCGGTTGATATCTTCACATATTCATGGAGCCAATGATGAAAAGCCCGTTGCTCGTCATACGGTGAACTTGCTTACATCAACAATCAAGGTTGATGCGGAACAGACAGATTTAAGATTCTGCTTTAGGATTGTTTCTCCTTCAAAGGTTTATACATTGCAGGCAGAAAATGCCCTGGACCAAAGGGATTGGATGGAAAAGATAACCGGAGTAATTGCATCCTTGCTCACTATACACACACTGGGAAAGCCTCAGCCTGTAATTTCTCGCTCAGAAGGTGGTGACTGGGATTCTGCCAGCCCAACTGATTCAGTACAAAGTTCTTCTGATGATGAAATGGCAGTAAATTCAGGTTTGGCATGCAAGATCACCCCCAAGTCAAATAGGTCACCTAATGGCTTGCAGAAGCATAAACACAGTATAAAATGTGAAAAGCCAATCGATGTTCTTCGAAGGGTTAATGGGAATGACAAATGTGCTGATTGTGGTAAATCTGAACCAGACTGGGCATCCTTAAACCTTGGCATCCTTGTATGCATTGAATGTTCTGGTGTTCATCGAAATCTTGGTGTACATATATCCAAAGTAAGATCACTGACACTTGATGTGAAAGTATGGGATTCCTCAGTTTTAAGCATGTTTCAATCACTTGGCAATCTCTTTGCAAACTCAGTTTGGGAGGAGTTATTGCATTCGAAAACTTCAACAGATGATACTCTTGATGGATCATCTAAGGGCACCAGAACCAAATTATTTCATGCAAGAAAACCTGCATATGATGATCCCATTTCACTAAAGGAGAGGTTCATCCATGCAAAGTATTCTGAGAAAGTCTTCGTTCGCCGGATACCAAACAACAATCGTCTCCGTACAGTGGCACAACTGGTCTGGGAAAGCATCTTTGCCAATGACAAGAAATCAGTGTACCGGCATATTGTGAGATCCAGTGTGGATATCAATGCTTTAAATTTAAATGGTCAATTTGATGGAAATTCTTTTGCCACGCCTTCTTCAAGTCACTCAAGCATGTCATCTGAAACTGAAAGCCAACTAATGGAGGACATAAAAGATGGCTCAAGTGTGCTTCACTTGGCATGCCTTGTATCTGATGCTGGAATGGTGGAGCTGCTCCTACAGTATGGTGCAGATATAAATGCAGTTGATTCAATTGGTCGAACACCATTACATTACTGCATGTTTAGAGGGAAGATTGCAACTGCAAAATTACTTATTTTAAGGGGGGCCAATACACATGTAGTAGATAAACAAGGAAAGACTCCTCTCATGCTTGCATCAGAACCTAGCAGTGAAATTGTTGGTCTCATATCAAGCAGATGA 2454 0.4156 MPLVSSLFSFDPITQQHQHPSSMYFAKLQDSPMFRQQLQTMEEGAESLRARCWRFYKGCKKYTDGLLDACDGDFTFASALENFGGEHSDPLFVTLGGPVMTKFSMALRDISTFKDALRTQVEQMLTDRLLHIYNVEIMDVKEARKRFDKASIAYDQAREKFMSLRKSTRQDIVIAIEEELHNARSSFEEARFNLISALHNVEAKKRFEFLEAVTGVMDAHLQYFRQGYELLHQLEPFIVEVLSYVQKARESHNEEQVSLFERMIEYKQLVHQESKLSLKGFYDSPGRDSPFSRISSDVLDAVTESVKTGKVQTIREGFLSKRSSNLRGDWKRRYFVLDSRGMLYYFRKPLTLFHGANSQKSHHTFDNSSGILSRLISSHIHGANDEKPVARHTVNLLTSTIKVDAEQTDLRFCFRIVSPSKVYTLQAENALDQRDWMEKITGVIASLLTIHTLGKPQPVISRSEGGDWDSASPTDSVQSSSDDEMAVNSGLACKITPKSNRSPNGLQKHKHSIKCEKPIDVLRRVNGNDKCADCGKSEPDWASLNLGILVCIECSGVHRNLGVHISKVRSLTLDVKVWDSSVLSMFQSLGNLFANSVWEELLHSKTSTDDTLDGSSKGTRTKLFHARKPAYDDPISLKERFIHAKYSEKVFVRRIPNNNRLRTVAQLVWESIFANDKKSVYRHIVRSSVDINALNLNGQFDGNSFATPSSSHSSMSSETESQLMEDIKDGSSVLHLACLVSDAGMVELLLQYGADINAVDSIGRTPLHYCMFRGKIATAKLLILRGANTHVVDKQGKTPLMLASEPSSEIVGLISSR 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g03304 817 Gene3D - 304 452 IPR011993 -
Aip08g03304 817 ProSiteProfiles ARF GTPase-activating proteins domain profile. 516 659 IPR001164 GO:0005096
Aip08g03304 817 PANTHER CENTAURIN/ARF 23 809 IPR045258 GO:0005096
Aip08g03304 817 Gene3D Arf GTPase activating protein 498 658 IPR038508 -
Aip08g03304 817 SMART PH_update 313 447 IPR001849 -
Aip08g03304 817 Pfam BAR domain of APPL family 28 256 - -
Aip08g03304 817 MobiDBLite consensus disorder prediction 459 482 - -
Aip08g03304 817 ProSiteProfiles Ankyrin repeat region circular profile. 729 760 - -
Aip08g03304 817 Coils Coil 140 160 - -
Aip08g03304 817 CDD BAR_SFC_plant 37 237 IPR035670 -
Aip08g03304 817 SUPERFAMILY ArfGap/RecO-like zinc finger 516 654 IPR037278 -
Aip08g03304 817 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD1 23 809 - -
Aip08g03304 817 CDD PH_ACAP 315 449 - -
Aip08g03304 817 ProSiteProfiles BAR domain profile. 23 258 IPR004148 GO:0005515|GO:0005737
Aip08g03304 817 SMART ANK_2a 729 758 IPR002110 GO:0005515
Aip08g03304 817 SMART ANK_2a 762 791 IPR002110 GO:0005515
Aip08g03304 817 PRINTS HIV Rev interacting protein signature 528 547 IPR001164 GO:0005096
Aip08g03304 817 PRINTS HIV Rev interacting protein signature 547 564 IPR001164 GO:0005096
Aip08g03304 817 PRINTS HIV Rev interacting protein signature 570 591 IPR001164 GO:0005096
Aip08g03304 817 SUPERFAMILY BAR/IMD domain-like 28 335 IPR027267 -
Aip08g03304 817 ProSiteProfiles PH domain profile. 312 445 IPR001849 -
Aip08g03304 817 Gene3D Arfaptin homology (AH) domain/BAR domain 26 272 IPR027267 -
Aip08g03304 817 ProSiteProfiles Ankyrin repeat region circular profile. 762 794 - -
Aip08g03304 817 MobiDBLite consensus disorder prediction 467 482 - -
Aip08g03304 817 ProSiteProfiles Ankyrin repeat profile. 729 761 IPR002110 GO:0005515
Aip08g03304 817 SUPERFAMILY PH domain-like 225 444 - -
Aip08g03304 817 Pfam Ankyrin repeats (3 copies) 734 811 IPR002110 GO:0005515
Aip08g03304 817 ProSiteProfiles Ankyrin repeat profile. 762 794 IPR002110 GO:0005515
Aip08g03304 817 SUPERFAMILY Ankyrin repeat 728 805 IPR036770 -
Aip08g03304 817 SMART 5bar 27 240 IPR004148 GO:0005515|GO:0005737
Aip08g03304 817 Gene3D - 707 814 IPR036770 -
Aip08g03304 817 Pfam PH domain 314 444 IPR001849 -
Aip08g03304 817 Pfam Putative GTPase activating protein for Arf 519 653 IPR001164 GO:0005096
Aip08g03304 817 SMART arf_gap_3 516 659 IPR001164 GO:0005096
Aip08g03304 817 CDD ArfGap 519 646 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g03304 Aip-Chr8 124103673 124113600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g03304 528 653 C2H2 Transcription Factor Family AT4G05330 41.732 6.75e-21 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g03304 K12489 - gmx:100797073 1045.8