Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g03303 ATGGCAGAGCCGTCGAGCAGGAAGAGGAGGAGAGATGAGCGATTCCAAGAGTCCGCCAGTCACAGAACCGCCGAGCAGAGGCGCCGACGAGACAAAGCTGCCGACGACGACAGGAGGAGAGAAAGGAAGGCAAAAGGCAGAGGCGCCAGAGAGGAGCGAGTCGGGTGTGGCCGTGTGGGTGTGGCTGAGCAGGAGGCACCGAGGCGAGGCAGTTCCGCAGTCCGCAGTAGCACCGTGTGGGTGTGGGTGTCACGGGTGTGGGTCTGCCGAGGAGTGAGAACAGATGAGGGAGCTGAGCTGTTGAAGGATGAAGCCGGGAGTCAGGTTAAACTCCCAAAGATCTGTGTTTTTGTTAGCTCCAAGAGGCTAGTTGCTGGGGATGCCTTCATATTCTTAAGAGGTGAGAATGGGGAGCTTCGTGTGGGCGTACGGAGAGCGATGAGACAGCAGGGGAATGTCCCATCCTCGGTTATTTCTAGCCACAGTATGCATCTTGGGGTTCTTGCAACTGCTTGGCATGCCATCTTGACAGGAACCATATTCACTGTTTATTATAAACCGAGGACTAGTCCTGCTGAGTTCATTGTTCCATACGACCAATATATGGAATCTCTAAAGAATAATTACACCATAGGAATGCGGTTTAAAATGAGGTTTGAAGGTGAAGAGGCTCCGGAACAGAGGTTTACTGGTACCATTGTTGGAATAGAAGATGCTGACTCAAAAAGGTGGCCTGAATCAAAATGGAGATGCCTCAAGGTGAGATGGGATGAAACATCTAACATTCCCCGTCCAGAGAGGGTTTCCCCTTGGAAAATAGAGCCTGCTCTTGCTCCTCCAGCTCTGAACCCTCTTTCCTATATTCAGATCTTCTTTCAGGCTTTGTTTTTTGGTGGCTACTGA 903 0.5138 MAEPSSRKRRRDERFQESASHRTAEQRRRRDKAADDDRRRERKAKGRGAREERVGCGRVGVAEQEAPRRGSSAVRSSTVWVWVSRVWVCRGVRTDEGAELLKDEAGSQVKLPKICVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAILTGTIFTVYYKPRTSPAEFIVPYDQYMESLKNNYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDADSKRWPESKWRCLKVRWDETSNIPRPERVSPWKIEPALAPPALNPLSYIQIFFQALFFGGY 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g03303 300 SUPERFAMILY DNA-binding pseudobarrel domain 117 174 IPR015300 -
Aip08g03303 300 Gene3D - 83 147 IPR015300 -
Aip08g03303 300 Pfam Auxin response factor 171 253 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Aip08g03303 300 MobiDBLite consensus disorder prediction 1 55 - -
Aip08g03303 300 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 116 286 IPR044835 GO:0003677|GO:0006355|GO:0009725
Aip08g03303 300 Gene3D - 208 278 - -
Aip08g03303 300 PANTHER AUXIN RESPONSE FACTOR 2 116 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g03303 Aip-Chr8 124084271 124092024 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g03303 116 285 B3 DNA Binding Superfamily AT5G62000 90.000 2.02e-108 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g03303 - - aip:107612759 343.584