Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g03297 ATGCATTTGTTTCGTGAAAGCAGTCTATTCTCAAGTTCATTGTCTGATATGTTTACTCAAAAGTTGAGATTAATGGGGAATGATGTTTTCCGGGATCAGTCTGTTTCCGTTGGTTCCCTTCCTGAGGAAGAACCATATAAATCTCTTCAAGAAATTGAGGCTGACACTATTGGGAATCTTCTTCCTGATGAGGATGACCTGTTTTCTGGTGTTGCTGATGAGTTAGGATCCAATGTTCATGCCAAAGCAAATGATGATTTCGAAGATTTTGATTTGTTTAGCAGTGGGGGAGGCATGGAGTTAGAAGGAGATGAACATCTAGTTTCAGGAAAAAGAGCCAGCGGCTTAGAAGGAGATCTTGGTTATTTCGGAGGTTCCAAAGGAAAAATTCCTTTTGGTGACCAATCTTCTAGGACACTTTTTGTTAGAAACATTAATAGCAATGTAGATGACTCTGAGCTGAAGACTCTCTTCGAGCAATATGGAGATATCCGAACCATGTATACCGCTTGCAAGCCTCGCGGTTTTGTCATGATTTCTTATTATGATATAAGGGCAGCACAAAATGCAATGAAAGCACTCCAACATAAGTCGTTGAGATCTCGAAAGCTTGATATACATTATTCAATTCCAAAGGGCAATGCTCCAGAAAAGGATATTGGTCATGGTGGTGTGATGATATCTGGTCTTGATTCATCTGTTTCAAATGAGGAACTTAAGCATATTTTCGCATTATATGGAGAAATTAAAGAAATATATGAATCTCCTGAAGTGAATCATGTGAAATTCATCGAGTTCTATGATGTGCGAGCTGCAGAAGCTTCTCTTGGTGCTTCGAACAGGATCTGCATTCCTGGGAAGCAGATCAAGCTTGAACCTGGCCATCCTAGAAATGCTATTCTAATGCAGCAGTCTCAAAAGGGACAAGAAGAACCAGATTTTGTTCATAATCTTAGTGATAACTTATTAAGACAGAACGCAACATCTTCTGGAGCAGCCACATCTGGTGGCAGCTTGGAGAGTGGATATAATCAGGGGTTTCAATCTGCAAAAAGGATACCTCTGAATGGTTTTGTTGATAATGCATTATATCCTGTGGGTTCTAGCATACCAAAGATGGCAAGAGGGGCTTCTGGTGGAAAAGTATCCGGAGTTTACGAGTCTGCAAATGTTGTTGATGCAATGAAACTGGGATCTATTACAAGGTTCCATCCTCATTCTTTACCTGAGTTTCATGATGGTTTAGCTAGTGGTAGTCCCTACAACTTTTCAAACCCCATCAGCAATGTTGCTGCCAGTATTGGAACTGGATCGACAGAATTGTCGGACAGCAGGCATATTCAGGGGATTGGCTCACCTGGCAACCTAGCTGAATTTAATGCAGTAGGAAACGGGAGCCGCCCGCCTCAGGGACTTTATCATATGTGGAACAACTCCAACTTGCATCAGCAACCTCCATCAAATGCCATGCTTTGGCATAAAACACCACCATCCTTTATTAATGGTGCTGGTGCTCCTGGTGTTCCGCAGATGCCCGGCTTTCCTAGAACACCACCTCATGTGCTGAGATCATCACAGATAGACCATCATGTCGGATCAGCACCGGTCGTTACTGCCTCACCCTGGGAAAGACAGCCTTCTTACTTGGGAGAGTCTCCTGAAGCTTCTAGTTTTCGAATGGGATCTTTAGGAAGTACAGGTTTTCATGGTTCTTGGCAGATGCATCCTCCGGACTTGTCTTCTCGCAACATGTTTTCTCATGTGGGTGGGAACAGTACAGAATTGTCATCCAGTGCTGGGCAGGGATCTCCTAAGTTGTCACATTTTTTCCCAGGGAGACTTCCCATGAATTCAATGCTGAAGTTTGATTCGGCCAATGAACGGATGAGAAGCCTCTATCATCGTAGAAGTGAAGCAAATACTAACAGTGCTGATAAAAAGCAATATGAGCTTGATCTAGGCCGCATATTGCGCGGGGAAGATAACCGAACCACACTTATGATAAAAAATATTCCAAACAAGTATACTTCAAAGATGCTTCTTGCTGCCATCGATGAGCAATGTCGGGGAACTTATGATTTTCTGTATTTGCCAATTGACTTCAAGGCAAGCATATATTTGGAGTTTAACAAATGTAATGTTGGCTATGCATTCATCAACATGATTGACCCTGGTCAAATTATTCAGTTCCATCAGGCTTTTAATGGGAAAAAATGGGAGAAGTTTAACAGTGAGAAAGTAGCTGTACTTGCATATGCCCGAATTCAAGGAAAAGCTGCTCTGATTGCTCATTTCCAGAATTCAAGTCTAATGAATGAAGATAAACGTTGTCGCCCCATTCTCTTCCACACGGATGGCCCAAATGCTGGTGATCCGGAGCCTTTCCCCTTGGGAAACAATATTCGAACAAGGCCAGGAAAATCTCGTACGAGTGCTAACGATGAGAATCGCAACCAAGGGAGTTCTTCAGCTGCAGCCGGAGATGAATCTGCTAATGGAGTAGAGTCGTCCTTGAGTTCATCGAAAACCTGA 2532 0.4269 MHLFRESSLFSSSLSDMFTQKLRLMGNDVFRDQSVSVGSLPEEEPYKSLQEIEADTIGNLLPDEDDLFSGVADELGSNVHAKANDDFEDFDLFSSGGGMELEGDEHLVSGKRASGLEGDLGYFGGSKGKIPFGDQSSRTLFVRNINSNVDDSELKTLFEQYGDIRTMYTACKPRGFVMISYYDIRAAQNAMKALQHKSLRSRKLDIHYSIPKGNAPEKDIGHGGVMISGLDSSVSNEELKHIFALYGEIKEIYESPEVNHVKFIEFYDVRAAEASLGASNRICIPGKQIKLEPGHPRNAILMQQSQKGQEEPDFVHNLSDNLLRQNATSSGAATSGGSLESGYNQGFQSAKRIPLNGFVDNALYPVGSSIPKMARGASGGKVSGVYESANVVDAMKLGSITRFHPHSLPEFHDGLASGSPYNFSNPISNVAASIGTGSTELSDSRHIQGIGSPGNLAEFNAVGNGSRPPQGLYHMWNNSNLHQQPPSNAMLWHKTPPSFINGAGAPGVPQMPGFPRTPPHVLRSSQIDHHVGSAPVVTASPWERQPSYLGESPEASSFRMGSLGSTGFHGSWQMHPPDLSSRNMFSHVGGNSTELSSSAGQGSPKLSHFFPGRLPMNSMLKFDSANERMRSLYHRRSEANTNSADKKQYELDLGRILRGEDNRTTLMIKNIPNKYTSKMLLAAIDEQCRGTYDFLYLPIDFKASIYLEFNKCNVGYAFINMIDPGQIIQFHQAFNGKKWEKFNSEKVAVLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPLGNNIRTRPGKSRTSANDENRNQGSSSAAAGDESANGVESSLSSSKT 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g03297 843 MobiDBLite consensus disorder prediction 803 843 - -
Aip08g03297 843 Gene3D - 223 317 IPR012677 -
Aip08g03297 843 Gene3D - 111 222 IPR012677 -
Aip08g03297 843 SUPERFAMILY RNA-binding domain, RBD 135 297 IPR035979 GO:0003676
Aip08g03297 843 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 225 290 IPR000504 GO:0003723
Aip08g03297 843 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 140 204 IPR000504 GO:0003723
Aip08g03297 843 PANTHER RNA RECOGNITION MOTIF-CONTAINING 5 842 - -
Aip08g03297 843 SUPERFAMILY RNA-binding domain, RBD 665 757 IPR035979 GO:0003676
Aip08g03297 843 PANTHER RNA RECOGNITION MOTIF 2, NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 5 842 - -
Aip08g03297 843 SMART rrm1_1 139 207 IPR000504 GO:0003723
Aip08g03297 843 SMART rrm1_1 224 292 IPR000504 GO:0003723
Aip08g03297 843 MobiDBLite consensus disorder prediction 781 843 - -
Aip08g03297 843 CDD RRM1_MEI2_like 137 212 IPR034453 -
Aip08g03297 843 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 223 296 IPR000504 GO:0003723
Aip08g03297 843 CDD RRM3_MEI2_like 666 758 IPR034454 -
Aip08g03297 843 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 138 211 IPR000504 GO:0003723
Aip08g03297 843 Pfam RNA recognition motif 2 663 766 IPR007201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g03297 Aip-Chr8 123994977 123999457 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g03297 133 312 Eukaryotic Initiation Factors Gene Family AT3G16380 22.388 1.12e-07 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g03297 - - aip:107612925 1671.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g03297 08 123994977 123999457 Aip08g03297 08 123994977 123999457 ECH
Aip03g03333 03 109555296 109561131 Aip08g03297 08 123994977 123999457 PCT