Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g03293 ATGTCGGCTATGGTTTCTGTCCTCACACAAGTCATGGGAGGAGGCATCCCAAATGACCCTTTAACCCCTTCTCATCAATCTACTAATCACAATGATCAACAATCTCAACCACCATCACAAGATCAAGGGAACATAAGAAGAAGACATTATAGAGGGGTGAGACAAAGGCCATGGGGGAAATGGGCGGCGGAGATTCGAGATCCACAAAAGGCGGCTAGGGTTTGGCTTGGAACTTTTGAAACTGCCGAGGCGGCTGCACTCGCATATGACGAGGCAGCCCTTAGATTCAAAGGAAGCAAAGCTAAACTCAATTTTCCTGAAAGAGTTCAAGGAACTGGCGAATTTGGTAATTATCTCACGAATTTTCAACAAAATAATAGTCACCATCAGATTCAATATCAGAATACAACAACTCAACAAAGTGTTCAATATCCATCACAAGGAATAATGGCAAGTGACGGTGGATTCGATTATAATCAACAGAACATGTATTTTGTTCCGTCTCATTATCAACACTATTCATCATCTTCTTCTTCATCTTCCGAACCACCACATCAACATTATAACCAACAACAAGAACTTATGAGATCATATTCATTGCAATATGGGGGTTCTTCTTCTTCTAGTGATCATCATTATCATCATCAGCAATATCCTCCTAAGAATTGGAATGATGATGACATGGATGGTAGACAATAA 699 0.4049 MSAMVSVLTQVMGGGIPNDPLTPSHQSTNHNDQQSQPPSQDQGNIRRRHYRGVRQRPWGKWAAEIRDPQKAARVWLGTFETAEAAALAYDEAALRFKGSKAKLNFPERVQGTGEFGNYLTNFQQNNSHHQIQYQNTTTQQSVQYPSQGIMASDGGFDYNQQNMYFVPSHYQHYSSSSSSSSEPPHQHYNQQQELMRSYSLQYGGSSSSSDHHYHHQQYPPKNWNDDDMDGRQ 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g03293 232 SUPERFAMILY DNA-binding domain 49 107 IPR016177 GO:0003677
Aip08g03293 232 Pfam AP2 domain 49 98 IPR001471 GO:0003700|GO:0006355
Aip08g03293 232 CDD AP2 49 107 IPR001471 GO:0003700|GO:0006355
Aip08g03293 232 ProSiteProfiles AP2/ERF domain profile. 49 106 IPR001471 GO:0003700|GO:0006355
Aip08g03293 232 MobiDBLite consensus disorder prediction 214 232 - -
Aip08g03293 232 MobiDBLite consensus disorder prediction 12 54 - -
Aip08g03293 232 MobiDBLite consensus disorder prediction 171 232 - -
Aip08g03293 232 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700|GO:0006355
Aip08g03293 232 PRINTS Ethylene responsive element binding protein signature 72 88 IPR001471 GO:0003700|GO:0006355
Aip08g03293 232 Gene3D AP2/ERF domain 48 108 IPR036955 GO:0003700|GO:0006355
Aip08g03293 232 MobiDBLite consensus disorder prediction 20 43 - -
Aip08g03293 232 PANTHER DNA-BINDING DOMAIN 24 221 IPR044808 GO:0003700|GO:0009873
Aip08g03293 232 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 24 221 - -
Aip08g03293 232 MobiDBLite consensus disorder prediction 171 213 - -
Aip08g03293 232 SMART rav1_2 49 112 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g03293 Aip-Chr8 123956891 123959146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g03293 1 110 AP2-EREBP Transcription Factor Family AT5G61890 68.644 3.87e-49 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip08g03293 AP2 1.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g03293 - - ahf:112773083 413.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g02645 06 116036805 116044233 Aip08g03293 08 123956891 123959146 ECH
Aip08g03293 08 123956891 123959146 Aip08g03293 08 123956891 123959146 ECH
Aip03g03341 03 109807259 109811194 Aip08g03293 08 123956891 123959146 PCT