Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g03260 ATGGCCAAATCCAACACTACTACCAAAAATACAACCTTAACACCAAAACCAACATGGGTTTTGCCTTATAGAACAAAAAATCTGAATGAAGTCTACACTCTAGGAAGAAAATTGGGTCAAGGTCAATTTGGAACCACATACCTTTGCACACACAAAACAACAGGATGCAAATATGCCTGCAAATCAATCCCAAAGAAGAAGCTTTTCTGCAAAGAGGATTATGATGATGTTTGGAGGGAGGTTCAGATAATGCACCATTTATCCGAGCACCCCAATGTGGTGAGGATCCATGGAACCTATGAGGACATCTCAAATGTTCATTTGGTTATGGAGGTTTGTGAGGGTGGTGAGTTGTTTGATAGGATTGTGAAGAAGGGTCAATACAGTGAGAGAGAGGCTGCAAAGGTTATTAAGACCATTGTTGAGGTTGTTGAGTCTTGTCACTCTCTTGGGGTCATGCATAGAGACCTAAAGCCTGAGAATTTCTTGTTTGATAGTGTTGAAGAAGATGCTAAGCTTAAAGCCACTGATTTTGGTTTGTCTGTGTTCTACAAACCAGGTGAATCTTTTACTGATGTTGTTGGAAGCCCTTACTATGTTGCGCCGGAAGTCCTGCGCAAACATTATGGACCAGAGTTAGACGTGTGGAGTGCCGGCGTTATCTTGTACATCTTACTAAGTGGAGTGCCACCATTCTGGGCAGAAACGGAGCAAGGGATCTTCAGGCAGATTTTAATGGGAAAACTTGATTTCCGCTCTGAGCCATGGCCTAGCATTTCCGGCAGCGCAAAGGATCTAATCCGGAAAATGCTAGACCGAAATCCAAAAACAAGGCTCACAGCTCACCAAGTACTTTGTCACCCGTGGATCGTTGATGACAATATTGCGCCGGATAAACCTCTTGATTCTGCTGTCTTATCGCGCCTGAAGCAGTTCTCCGCAATGAATAAGCTTAAGAAGATGGCGCTGCGCGTTATTGCTGAGAGGCTCTCTGAGGAAGAAATTGGTGGTCTGAAAGAGTTGTTTAAGATGCTTGATGCAGACAACAGCGGAACCATAACATTTGAAGAGCTAAAAGTTGGTTTAAAGAAAGTAGGATCTGAACTTATGGAATCCGAAATCAAGGATCTTATGGATGCAGCTGATATTGATAACAGTGGTACAATTGACTATGGTGAATTCATTGCTGCTACTGTTCACTTGAATAAGCTTGAGAGAGAGGAAAACCTGTTGTCAGCATTCTCTTATTTTGACAAAGATGGAAGTGGCTACATAACCATTGATGAGATTCAACAAGCTTGTAAGGAGTTTGGTTTGGATGATGTCCATATTGATGAAATGGTCAAGGAAATTGATCAAGACAATGATGGACAAATAGATTATGGCGAATTTGCTGCCATGATGAGAAAAGGTAATGCAGGCGGAGCGATCGGAAGGCGAACTATGAGAAGAACACTCAATTTCAGAGATGCTCTGGGAATCCCAAGGGATGGATCTGATCAATCTGCTGATGATTACCTTTAG 1524 0.4239 MAKSNTTTKNTTLTPKPTWVLPYRTKNLNEVYTLGRKLGQGQFGTTYLCTHKTTGCKYACKSIPKKKLFCKEDYDDVWREVQIMHHLSEHPNVVRIHGTYEDISNVHLVMEVCEGGELFDRIVKKGQYSEREAAKVIKTIVEVVESCHSLGVMHRDLKPENFLFDSVEEDAKLKATDFGLSVFYKPGESFTDVVGSPYYVAPEVLRKHYGPELDVWSAGVILYILLSGVPPFWAETEQGIFRQILMGKLDFRSEPWPSISGSAKDLIRKMLDRNPKTRLTAHQVLCHPWIVDDNIAPDKPLDSAVLSRLKQFSAMNKLKKMALRVIAERLSEEEIGGLKELFKMLDADNSGTITFEELKVGLKKVGSELMESEIKDLMDAADIDNSGTIDYGEFIAATVHLNKLEREENLLSAFSYFDKDGSGYITIDEIQQACKEFGLDDVHIDEMVKEIDQDNDGQIDYGEFAAMMRKGNAGGAIGRRTMRRTLNFRDALGIPRDGSDQSADDYL 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g03260 507 ProSiteProfiles EF-hand calcium-binding domain profile. 369 404 IPR002048 GO:0005509
Aip08g03260 507 Pfam Protein kinase domain 32 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip08g03260 507 ProSitePatterns Protein kinases ATP-binding region signature. 38 66 IPR017441 GO:0005524
Aip08g03260 507 SUPERFAMILY Protein kinase-like (PK-like) 17 309 IPR011009 -
Aip08g03260 507 ProSiteProfiles EF-hand calcium-binding domain profile. 443 474 IPR002048 GO:0005509
Aip08g03260 507 ProSitePatterns EF-hand calcium-binding domain. 346 358 IPR018247 -
Aip08g03260 507 PANTHER BNAA09G05220D PROTEIN 18 482 - -
Aip08g03260 507 ProSiteProfiles EF-hand calcium-binding domain profile. 333 368 IPR002048 GO:0005509
Aip08g03260 507 Pfam EF-hand domain pair 338 398 IPR002048 GO:0005509
Aip08g03260 507 Pfam EF-hand domain pair 408 469 IPR002048 GO:0005509
Aip08g03260 507 Gene3D Phosphorylase Kinase; domain 1 34 118 - -
Aip08g03260 507 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672|GO:0006468
Aip08g03260 507 ProSitePatterns EF-hand calcium-binding domain. 382 394 IPR018247 -
Aip08g03260 507 CDD EFh 338 397 IPR002048 GO:0005509
Aip08g03260 507 ProSitePatterns EF-hand calcium-binding domain. 452 464 IPR018247 -
Aip08g03260 507 ProSitePatterns EF-hand calcium-binding domain. 418 430 IPR018247 -
Aip08g03260 507 Gene3D - 331 402 - -
Aip08g03260 507 SUPERFAMILY EF-hand 329 469 IPR011992 -
Aip08g03260 507 Gene3D Transferase(Phosphotransferase) domain 1 119 330 - -
Aip08g03260 507 ProSiteProfiles EF-hand calcium-binding domain profile. 405 440 IPR002048 GO:0005509
Aip08g03260 507 ProSiteProfiles Protein kinase domain profile. 32 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip08g03260 507 Gene3D - 403 507 - -
Aip08g03260 507 SMART efh_1 443 471 IPR002048 GO:0005509
Aip08g03260 507 SMART efh_1 409 437 IPR002048 GO:0005509
Aip08g03260 507 SMART efh_1 373 401 IPR002048 GO:0005509
Aip08g03260 507 SMART efh_1 337 365 IPR002048 GO:0005509
Aip08g03260 507 PANTHER SERINE/THREONINE-PROTEIN KINASE 18 482 - -
Aip08g03260 507 CDD EFh 410 469 IPR002048 GO:0005509
Aip08g03260 507 CDD STKc_CAMK 31 289 - -
Aip08g03260 507 SMART serkin_6 32 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g03260 Aip-Chr8 123669263 123672327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g03260 20 505 EF-hand Containing Proteins AT4G09570 77.505 0.0 792
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Aip08g03260 Pkinase 9.4e-79 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g03260 K13412 - gmx:100805961 900.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g03260 08 123669263 123672327 Aip08g03260 08 123669263 123672327 ECH