Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g03253 ATGGGTAGATCTCCTTGTTGTGAGAAAGAACACACAAACAAAGGTGCTTGGACCAAAGAGGAAGATCAACGCCTCATCAACTACATCAAGATTCATGGTGAAGGTTGTTGGAGATCTCTTCCCAAAGCTGCTGGTTTATTGAGATGTGGAAAGAGTTGCAGACTGAGATGGATAAATTACCTGAGGCCTGATCTAAAGAGAGGAAACTTCACTGAAGAAGAAGATGAACTCATCATCAACCTTCATAGCTTACTTGGAAACAACCGGGGAATTGATCCTCAAACTCACCGGCCGGTTAATGCGACCGGAATCACAGCCACAGCCACAGCCACAGTCGCAGTCGCAACCGAAAACAATAAGAAAAGCAAGGAAAAAAACAATAGCATTATTTTAAGCACCAACATTATTAATGACAACAATAATAACAAGTTTCAATTGGTGAGTGACTTGGTTTGTGAAGATTCATCAAATAGTAGCAGTGGTGTTACCATTGAAGAACAAACATACCCTCTTCATAATCATCATCATCATTGCCAACTCAACTTGGATCTTTCCATTGGTCTTCCCTCTCAACAAAATAACCAAGCTTCTTCAAATTCCATGAACCAAGAAAACAACAACAACAACAAGAAGTTGAAGCAAGAACAAGAAGAAGCACATGGTGTTTTCTATCATCATCAATGGTGCCATTGTTGGTGGTACGGCGGTTACTACAACCGCCGCAGATAA 729 0.4088 MGRSPCCEKEHTNKGAWTKEEDQRLINYIKIHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIINLHSLLGNNRGIDPQTHRPVNATGITATATATVAVATENNKKSKEKNNSIILSTNIINDNNNNKFQLVSDLVCEDSSNSSSGVTIEEQTYPLHNHHHHCQLNLDLSIGLPSQQNNQASSNSMNQENNNNNKKLKQEQEEAHGVFYHHQWCHCWWYGGYYNRRR 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g03253 242 PANTHER TRANSCRIPTION FACTOR MYB7 1 87 - -
Aip08g03253 242 PANTHER TRANSCRIPTION FACTOR MYB7 88 212 - -
Aip08g03253 242 SUPERFAMILY Homeodomain-like 15 87 IPR009057 -
Aip08g03253 242 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Aip08g03253 242 Coils Coil 198 218 - -
Aip08g03253 242 SMART sant 13 63 IPR001005 -
Aip08g03253 242 SMART sant 66 174 IPR001005 -
Aip08g03253 242 CDD SANT 16 61 IPR001005 -
Aip08g03253 242 Gene3D - 14 66 - -
Aip08g03253 242 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Aip08g03253 242 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 87 - -
Aip08g03253 242 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 88 212 - -
Aip08g03253 242 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g03253 Aip-Chr8 123524426 123526021 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g03253 1 190 MYB Transcription Factor Family AT4G09460 47.111 2.08e-60 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Aip08g03253 Myb_DNA-binding 6.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g03253 K09422 - gmx:778033 241.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g03253 08 123524426 123526021 Aip08g03253 08 123524426 123526021 ECH
Aip03g03374 03 110580524 110582030 Aip08g03253 08 123524426 123526021 PCT