Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g03203 ATGCAGACTTTATTGTTATCTCGTGATAAAATCTTACTGATTGCGAATGATACAAGCAAGGAAGGAGAAATTGAGCTGTTTCTGGAAAAGCTGAAGTACTTATGTCTGCGTCGTTGCCGTCGGCTGAAACAAATTCCAGATCTTTTTGAAGCTCCCAATCTTGAAATACTCAACGCTGAAGGTTGTTATGAACTGAATGATTTCCCCTCGTATCTCACACGCCACAAGAGCCTTGTTAAACTTGTTTTATATCGTTGCTCAAGTCTTGAAACTCTTGGGAGTAAATTGGAGATGAGTTCCCTTAAGGAACTTGATCTTACTTGCTGCACAAGTATGAGGAAACCTCCAAATTTTGGAGAATGCATGAAAAATTTATCAGTTCTTTCTTTGGCGGGCACAGCCATAGAAGAACTACCCACAACTGTTAGCTGTTTAGTTGGCCTAAAGAAGTTGTACTTACAGCATTGCCAAAGGCTTACTTGCCTTCCAGACAGCATTCAAAAGTTAAAATCCCTTACAATTTTGGATCTTTCTTTCTGCCCAAATGTACTTCAATCTTTGCATTCTCTATCTGCTCTGACATCATTGAGCACACTGAGATTATCGAGATGTTTTGTCACATCTCAAGAGTCATGGTCTTACAATCTTACCAACTTAGTGTCTTTGACGGATTTGCATTTATCACAGAACAATTTTGTAAGGGTTCCAATAAATATCCATGAACTCCCCAGGCTTAGACATCTGAATCTAGACTACTGCCCTCATCTAAAGGTTTTACCAGAGCTTCCGTCAAGCTTAAGAGAGTTATATGCACAAGATTCTGAATCACTGGATACATGGCATTCGAATGTGATATCAAAGGTGTGTTGTGGCTTTGCAGCGTCAGCTAACCATGATTCTGATGGGATCTTGCAAATGTGGGTTGCACAGAAGCAAATAGGGTTGACCACAGGGGAGGAAATTCCATTGTGGTTTGTCCATCAGGAACAGGGTAATGGAGTATCAGTCACATTGCCACGTAATGAAACTTTGGCACTTGCTCTCTGTTTCCGATTATGCCCAATGAATAGTCATAACTTTCTAAAACTTACTCGAATGTTGTCGGTGATTTGCAACGGTGAGAAATTCATCAAAAAGGATTTAACTGTGATGCGTGAAACTAATCATTCTCAGCATTTCATCCTTTGCTTGACCAGTGACTATTTTGTTGACCAATTCTGCCAAGACTATCGCTTCGAACTGGTACTTCCTAGTTATTTTGAAATGAAAGTAGAGAGTTTTGGGGTTCGTTGGGTGTGCAAGCCAGACATTCAAGATTTGAAGAAAAGTGGAACCGAAACATCATAA 1347 0.4001 MQTLLLSRDKILLIANDTSKEGEIELFLEKLKYLCLRRCRRLKQIPDLFEAPNLEILNAEGCYELNDFPSYLTRHKSLVKLVLYRCSSLETLGSKLEMSSLKELDLTCCTSMRKPPNFGECMKNLSVLSLAGTAIEELPTTVSCLVGLKKLYLQHCQRLTCLPDSIQKLKSLTILDLSFCPNVLQSLHSLSALTSLSTLRLSRCFVTSQESWSYNLTNLVSLTDLHLSQNNFVRVPINIHELPRLRHLNLDYCPHLKVLPELPSSLRELYAQDSESLDTWHSNVISKVCCGFAASANHDSDGILQMWVAQKQIGLTTGEEIPLWFVHQEQGNGVSVTLPRNETLALALCFRLCPMNSHNFLKLTRMLSVICNGEKFIKKDLTVMRETNHSQHFILCLTSDYFVDQFCQDYRFELVLPSYFEMKVESFGVRWVCKPDIQDLKKSGTETS 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g03203 448 Pfam Leucine Rich Repeat 244 258 IPR001611 GO:0005515
Aip08g03203 448 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN SOG2 28 120 - -
Aip08g03203 448 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN SOG2 122 286 - -
Aip08g03203 448 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN SOG2 68 204 - -
Aip08g03203 448 Pfam C-JID domain 317 435 IPR045344 -
Aip08g03203 448 Gene3D Ribonuclease Inhibitor 117 290 IPR032675 -
Aip08g03203 448 Gene3D Ribonuclease Inhibitor 2 116 IPR032675 -
Aip08g03203 448 PANTHER LEUCINE RICH REPEAT CONTAINING PROTEIN 28 120 - -
Aip08g03203 448 PANTHER LEUCINE RICH REPEAT CONTAINING PROTEIN 122 286 - -
Aip08g03203 448 PANTHER LEUCINE RICH REPEAT CONTAINING PROTEIN 68 204 - -
Aip08g03203 448 SUPERFAMILY L domain-like 26 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g03203 Aip-Chr8 122746003 122748195 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g03203 28 203 WRKY Transcription Factor Family AT4G12020 38.636 3.72e-20 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g03203 - - ahf:112769348 584.719