Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g03200 ATGGAAACTCTGCCGGCCTTCATGGATCAATACTATGAGCTTGTTGAAATTGATCTATCTTATAGCTCCAGCATTATACAATTTCTGCAAAAGCTGAAGTACTTATATCTGTCTAAGTGCCCTCGGCTGAAACAAATTCCAGATCTTTCTGAAGTTCCCAATCTTGAAATACTTCACGTTGAATATTGTGATGAACTGAATGATTTTCCCTCgcaccagaaaggaaccttcggagaagctttcaggaaacatgaacacagattcggacaagaaagtgacaaggttagaagatggagagatgcgttaacacaagttgcctgttactctggttggACCTCCAAAAATCAGAATGAGGCAACATTGGTGGAAAACATTTCTCAGAGTATACATAAAAAATTGATCCCAAACTTGCCATCTTCCATGAACAAGCTTGTAGGGATTGATTCAAGAGTGGAGCAAGGAACTGAAGCAAGTAGCATCATTTTACACGAATGGGATTGCTATGGAAAACCAGGTTTAGTACATTGGAGAGATTTAACTTTTTCAGATATATGTCAGCTAAAGCTCCTCATTTTAGATGGCGTGGAAGCTCCAATTCTTAGCTATATTCCTTCTACATTGAGAGTTTTGCGCTGGAGATGTTGTCCAATGGAAACTCTCCCCTTTATGGATCAAGGCTATGAGCTAGTTGAAATTAATCTGTCTGATAGCTCCAGCATTGTACAAGTATGGCATGGAAAAAAGTTTCTGGAAAAGCTGAAGTACTTATCTCTGAAGTACTTATATCGGCTGAAACAAATTCCAGATCTTTCTGAAGCTCCCAATCTTGAAATACTTGACGTTGAAGATTGTTATGAACTGGGTGATTTTCCCTCGTATCTCACACTTCACAAGAGCCTTGTTAAACTTAGTTTACGTAATTCCTCAAGTCTTGAAACTCTTGGGAGTAAATTGGAGATGAGTTCCCTCAAGGAATTACGTCTTGATGACTGCACAAGTATGAGGAAACTTGCAGAATTTGGAGAATGCATGAAACATTTATCAGTTCTTTCTTTGTCGTATACAGCCATCGAAGAACTACCCACAACGGTTGGCTGTTTAGTTGGCCTAAAGGAGTTGCACTTAAGATGTTGTGAAAGGCTTGCTTGCCTTCCAGACAGCATTCAAAAGTTAAAATCCCTCATATTTTTTAATCTTTCTGGCTGCCTAAATGTCCTTCAATCTTTGCATTCTCTATCTGGTCTGACCTCATTGGATACCCTGATATTATCGGGGTGTTTTGTCACATCTCAAGAGTCGTGGTCTTACAATCTTGGCAACTTAGTGTCTTTGACGAATTTGTATTTATCAAAGAACAAGTTTGTAAGGGTTCCAATAAATATCCATGAACTCCCCAGGCTTAGATGTCTATATCTAGACCGCTGCCCTAATCTGAAGGTTTTACCAGAGCTTCCGTCAAGTATAAGAGAGCTAAATGCACGAGATTCTGCATCACTGGATACATGGCATTTGAATGTGATATCAAAGGTGTGTTGTGGCTTTGCAGCATCAGCTAACCATCATTCTGATGGGCTCTTGCAAATGTGGCTCGCACAGAATGAAGAGGAGAAAATTCCATTGTGGTTTGTCCATAAGGAACTGGATATATGTCAGCTAAAGCTCCTCATTTTAGATGGCGTGGAAGCTCCAATTCTTAGCTATATTCCTTCTACATTGAGAGTTTTGCGCTGGAGATGTTGTCCAATGGAAACTCTCCCCTTTATGGATCAAGGCTATGAGCTAGTTGAAATTAATCTGTCTGATAGCTCCAGCATTGTACAAGTATGGCATGGAAAAAAGTTTCTTGAAAAGCTGAAGTACTTATATCTGAAGTGCTTATATCGGCTGAAACAAATTCCAGATCTTTCTGAAGCTCCTAATCTTGAAATACTTGACGTTCAATGTTGTGATGAACTGAATGATTTTCCCTCGTATCTCACACGCCACAAGAGCCTTGTTAAACTTATTTTATATCGTTGCTCAAGTCTTGAAACTCTTGCGAGTAAATTGGAGATGAATTCCCTTAAGGAACTAGATCTTGGTTTCTGTACAAGTATGAGAAAACCACCAGAATTTGGAGAATGCATGAAACATTTATCAGTTCTTTATTTGTGGGGAACAGCCATAGAAGAACTACCCACAACGGTTAGCTGTTTAGTTGGCCTAAAGGATTTGCGCTTACAGCATTGCCAAAGGCTTACTTGCCTTCCAGACAGCATTCAAGTGTTAAAATCCCTCACATTTTTTAATCTTTTTTACTGTCCAAATGTCCTTCAATCTTTGCATTCTCTGTCTAGTCTAACCTCATTGGATACTCTGATATTATCGGGGTGTTTTGTCACATCTCAAGAGTCGTGGTCTTACAATCTTGGCAACTTAGTGTCTTTGAGGGATTTGGAATTATCACATAACAATTTTGTAAGGGTTCCAATAAATATCCATGAACTCCCCAGGCTTAGACATCTGAATCTAGACTACTGTCCTAGTCTGAAGGTTTTACCAGAGCTTCCATCAAGTATAAGAGTGTTAAATGCACGAGATTCTGCATCACTGGATGCAGGGCATTCGAATGTTATATCAAAGTTGTGTTGTGGCTTTGCAGCATCAGCTATCCATGATTCTGATGGGCTCTTGCAAATGTGGGTCGCACAGAATGAAGGGGAGGAAATTCCATTGTGGTTTGTCCATCAAGAAGAGGGTAATGGAGTATCAGTCACATTGCCACATAATGAAACCATGGCACTTGCTCTCTGTTTCCAATTATGCCCAAGGAGAAGTAGTCGTAATTATGTGGTAAATTTACCGGTGATTTGCAACGGTAAGGAATTCATTACAAAGCATTTAACTGTGTTGCGTGAAACTAAAAATTCTCAGCATTTCATCCTTTGCTTGAGCAGTGACTATTTTGTTGACCAATTTTGCCAAGACTATCGCTTTGAACTGGTATTTCCTAATAACGTTGAAATGAAAGTACACAGTTCTGGGGTTCGGTGGGTGTGCAAGCAAGACATCCAGGATTTGAAGAAAAGTGGGACTGAAACATCAAAAAGAAAAGCAACTTTTGATCTGAACATGAACATGAACATCACCCCACCTTCTTCTCCTTGTAGGAAAAAGTTGCTCATGGTTACCCCTTCGTCTGTGTCTCCGCTGGAGGAGGAAGAGGAAGAGTAA 3213 0.3822 METLPAFMDQYYELVEIDLSYSSSIIQFLQKLKYLYLSKCPRLKQIPDLSEVPNLEILHVEYCDELNDFPSHQKGTFGEAFRKHEHRFGQESDKVRRWRDALTQVACYSGWTSKNQNEATLVENISQSIHKKLIPNLPSSMNKLVGIDSRVEQGTEASSIILHEWDCYGKPGLVHWRDLTFSDICQLKLLILDGVEAPILSYIPSTLRVLRWRCCPMETLPFMDQGYELVEINLSDSSSIVQVWHGKKFLEKLKYLSLKYLYRLKQIPDLSEAPNLEILDVEDCYELGDFPSYLTLHKSLVKLSLRNSSSLETLGSKLEMSSLKELRLDDCTSMRKLAEFGECMKHLSVLSLSYTAIEELPTTVGCLVGLKELHLRCCERLACLPDSIQKLKSLIFFNLSGCLNVLQSLHSLSGLTSLDTLILSGCFVTSQESWSYNLGNLVSLTNLYLSKNKFVRVPINIHELPRLRCLYLDRCPNLKVLPELPSSIRELNARDSASLDTWHLNVISKVCCGFAASANHHSDGLLQMWLAQNEEEKIPLWFVHKELDICQLKLLILDGVEAPILSYIPSTLRVLRWRCCPMETLPFMDQGYELVEINLSDSSSIVQVWHGKKFLEKLKYLYLKCLYRLKQIPDLSEAPNLEILDVQCCDELNDFPSYLTRHKSLVKLILYRCSSLETLASKLEMNSLKELDLGFCTSMRKPPEFGECMKHLSVLYLWGTAIEELPTTVSCLVGLKDLRLQHCQRLTCLPDSIQVLKSLTFFNLFYCPNVLQSLHSLSSLTSLDTLILSGCFVTSQESWSYNLGNLVSLRDLELSHNNFVRVPINIHELPRLRHLNLDYCPSLKVLPELPSSIRVLNARDSASLDAGHSNVISKLCCGFAASAIHDSDGLLQMWVAQNEGEEIPLWFVHQEEGNGVSVTLPHNETMALALCFQLCPRRSSRNYVVNLPVICNGKEFITKHLTVLRETKNSQHFILCLSSDYFVDQFCQDYRFELVFPNNVEMKVHSSGVRWVCKQDIQDLKKSGTETSKRKATFDLNMNMNITPPSSPCRKKLLMVTPSSVSPLEEEEEE 1070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g03200 1070 Pfam C-JID domain 900 1017 IPR045344 -
Aip08g03200 1070 Gene3D Ribonuclease Inhibitor 342 512 IPR032675 -
Aip08g03200 1070 SUPERFAMILY L domain-like 4 70 - -
Aip08g03200 1070 Gene3D Ribonuclease Inhibitor 151 341 IPR032675 -
Aip08g03200 1070 Gene3D Ribonuclease Inhibitor 525 870 IPR032675 -
Aip08g03200 1070 SUPERFAMILY L domain-like 547 860 - -
Aip08g03200 1070 SUPERFAMILY L domain-like 176 499 - -
Aip08g03200 1070 SMART LRR_typ_2 344 367 IPR003591 -
Aip08g03200 1070 SMART LRR_typ_2 806 829 IPR003591 -
Aip08g03200 1070 SMART LRR_typ_2 441 464 IPR003591 -
Aip08g03200 1070 SMART LRR_typ_2 709 732 IPR003591 -
Aip08g03200 1070 Pfam TIR domain 53 143 IPR000157 GO:0007165
Aip08g03200 1070 Gene3D - 42 137 IPR035897 -
Aip08g03200 1070 PANTHER LEUCINE RICH REPEAT CONTAINING PROTEIN 3 221 - -
Aip08g03200 1070 PANTHER LEUCINE RICH REPEAT CONTAINING PROTEIN 559 743 - -
Aip08g03200 1070 PANTHER LEUCINE RICH REPEAT CONTAINING PROTEIN 635 854 - -
Aip08g03200 1070 PANTHER LEUCINE RICH REPEAT CONTAINING PROTEIN 237 426 - -
Aip08g03200 1070 PANTHER LEUCINE RICH REPEAT CONTAINING PROTEIN 437 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g03200 Aip-Chr8 122727339 122735581 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g03200 549 767 WRKY Transcription Factor Family AT4G12020 37.712 2.54e-26 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g03200 - - ahf:112769348 779.63