Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g03186 ATGCAAGGTGGATTAGAGTTACCGCCAGGGTTCAGGTTTCACCCGAGCGACGAGGAATTGGTGAACCACTATCTCTGCAAGAAATGCGCAAAGCAATCAATTGCTGCTCCAATAATTAAGGAAATCGATTTGTACAAGTTCGATCCGTGGCAGCTTCCAGAGATGGCGTTGTACGGAGAGAAGGAGTGGTACTTCTTTTCGCCGAGGGATAGGAAATATCCGAACGGATCCCGGCCGAACCGGGCGGCTGGGAGCGGGTACTGGAAGGCGACCGGGGCGGACAAGCCGATAGGGAAGCCGAAGGCGCTAGGGATAAAGAAAGCGCTAGTGTTCTACGCCGGAAAGGCCCCGAAAGGAGTGAAGACTAATTGGATTATGCATGAGTACCGTCTCGCCAATGTTGACAGATCCGCCGCCAACAAACTCAACAACAACAACTTGAGGCTTGATGATTGGGTGTTGTGTCGAATCTACAACAAGAAAGGGAAGATTGAGAAATTCAACTCTGCCACAACAGGGTTGGAACAGAAACTACCAAAGTTTTCACCAGGGGAGATACTTCACTATGATCATGATCATGAGCATGAGACAAAGCCAAAGATTATCCACAATTTCTCCAACAATGAGCACCAATTGTACATGGACACATCAGATTCCGTTCCAAGGCTGCACACGGACTCTAGCTGCTCGGATCACGCGGTTTCGCCGGACGCCACCTGCGACAAGGAGGTGGAGAGCAACCCAAAGTGGAGCAATGAGCTAGATATGCAGCTGTTTGATACCTTTGATTTTCAGCTCAACAACTATGATAATAGCCTCCCAATGAATGATGATGACCTTTTTGGAAATCAGTTCCAAATGAATCAGCTCATGTCTTTCCAAGACACATTCTTGTTCCCACAAAAGCCATTTTGA 915 0.4809 MQGGLELPPGFRFHPSDEELVNHYLCKKCAKQSIAAPIIKEIDLYKFDPWQLPEMALYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGKPKALGIKKALVFYAGKAPKGVKTNWIMHEYRLANVDRSAANKLNNNNLRLDDWVLCRIYNKKGKIEKFNSATTGLEQKLPKFSPGEILHYDHDHEHETKPKIIHNFSNNEHQLYMDTSDSVPRLHTDSSCSDHAVSPDATCDKEVESNPKWSNELDMQLFDTFDFQLNNYDNSLPMNDDDLFGNQFQMNQLMSFQDTFLFPQKPF 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g03186 304 ProSiteProfiles NAC domain profile. 7 160 IPR003441 GO:0003677|GO:0006355
Aip08g03186 304 Gene3D NAC domain 16 165 IPR036093 GO:0003677|GO:0006355
Aip08g03186 304 PANTHER NAC TRANSCRIPTION FACTOR 56 5 281 - -
Aip08g03186 304 SUPERFAMILY NAC domain 4 160 IPR036093 GO:0003677|GO:0006355
Aip08g03186 304 PANTHER NAC DOMAIN-CONTAINING PROTEIN 2-LIKE 5 281 - -
Aip08g03186 304 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
Aip08g03186 304 MobiDBLite consensus disorder prediction 224 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g03186 Aip-Chr8 122601065 122602446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g03186 1 304 NAC Transcription Factor Family AT1G01720 59.295 9.37e-122 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Aip08g03186 NAM 9e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g03186 - - adu:107463232 633.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g03186 08 122601065 122602446 Aip08g03186 08 122601065 122602446 ECH
Aip03g03422 03 112024351 112025663 Aip08g03186 08 122601065 122602446 ECH