Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g03178 ATGAGTCAAGAGAATTCAGACGTGCTGAGGATGATAGAGGCAGAGCTTTTTGTCGACGACGACAATGTGGGTGGTAATCCGCCGCCTCAGCCTGAGGCTGATTGGGATATGGAGAAGATGTTAGAGCTGATTGCCGGCGATGTCGGTGGTCATCAACCACTTCAACCTCAACCTCAGTCCAAGCTGCAGTTGGATAAAAGGAATATGACAGAGCAGTCTTGTTTTGCTGGCATATCTGGTTATCAACCATTTCAGTCTCAACCTCAGCCTTGGTCTCGGCCACTTCAGTCTCAGCCTTGGTCTCGGTCTCGACCTCGGCTTCTTTCTGAGCCTCGGCCTCAGTCTGAGACGGCGACGAATGAGTTTTTCGCTGACACATGTGGTTATCCCCAACCTCAGCCTCAGCCTCAGCCTCAGCCTCAGCCTCAGACTGAGTGGGATACCAGGAACATGTTAGAGCTGATTCCCGATGTCGGTGGTCATCAACCACTTCAACCTCAACCTCCGGTCTGGACTTGGGAGGAGAACAAAGCTTTTGAGTCTGTTATTACCAGTTGTTTTCAGGATGCTCTACGTAACCACTGGGAGGAAGTGGCTGCTCGTCTCCCCGGCAGGACCCCGGCACAGCTGCAAGAACGCTTTCAGAAGCTGATGAACGACATCAGTGCCATCCATAACGGTTATCCTACAAACACTCCTCTCAATGCTGCATCTGATAACATGACCATCATGATGGAACACAACCCTCACTCCATCCCCATCATCAATCCACCACCATTACCGCCTTATTCGACTGATCATCAACATCACAGAGAGGAGGTACTGCCGGCTGCAGAGGAGGTCGTGTCAACTGCAGAGGAGGAGGCCGCACCAAGGAATTCAGGATATCATTGGACCCAAGATGAACATAGTTCTCTGGCCTTGATGGCAATGCCGAAGAGGACAGTGAACTAG 954 0.5136 MSQENSDVLRMIEAELFVDDDNVGGNPPPQPEADWDMEKMLELIAGDVGGHQPLQPQPQSKLQLDKRNMTEQSCFAGISGYQPFQSQPQPWSRPLQSQPWSRSRPRLLSEPRPQSETATNEFFADTCGYPQPQPQPQPQPQPQTEWDTRNMLELIPDVGGHQPLQPQPPVWTWEENKAFESVITSCFQDALRNHWEEVAARLPGRTPAQLQERFQKLMNDISAIHNGYPTNTPLNAASDNMTIMMEHNPHSIPIINPPPLPPYSTDHQHHREEVLPAAEEVVSTAEEEAAPRNSGYHWTQDEHSSLALMAMPKRTVN 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g03178 317 Gene3D - 167 229 - -
Aip08g03178 317 MobiDBLite consensus disorder prediction 53 126 - -
Aip08g03178 317 SUPERFAMILY Homeodomain-like 170 226 IPR009057 -
Aip08g03178 317 ProSiteProfiles Myb-like domain profile. 171 218 IPR001005 -
Aip08g03178 317 CDD SANT 171 218 IPR001005 -
Aip08g03178 317 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 169 305 IPR043363 -
Aip08g03178 317 MobiDBLite consensus disorder prediction 46 144 - -
Aip08g03178 317 SMART sant 167 220 IPR001005 -
Aip08g03178 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 193 222 IPR017930 -
Aip08g03178 317 Pfam Myb-like DNA-binding domain 170 217 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g03178 Aip-Chr8 122487975 122490202 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Aip08g03178 Myb_DNA-binding 1.7e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g03178 - - ahf:112773219 333.954