Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g03163 ATGGAGGTGATAGGGTTCAATGTTTTGGGTTCTGGAGATGAAGGTGTAATCAAATCCAATAATAATAAGAGATTGGTTATACGGTATAGTAGGATTAAGCACCTCCGTCCATCCCTCCCTCATCGCTCATGCCCCGCACCGCCGTCTCCCTCTCCCACACCCGTCGCGCCACCCGTCAGCGCCACCGTCATTCCGCTACTCTCTCTTTTTCTCTCTACATGGACTCTCACTCTCCCTCCTCCGTCATCATTACCGGTGCCGGCATCTCTGGTGTTTATCCATGAATCGGCAGCAGGATCCGGAAGGAAACCATCGGTGGCGTCTCCGTCGAGCTCGGTGCCGGATGCATCGCTGGCGTCGGCGATTTTCGTGAAGACTCTAACCGGGAAGACGATAACGCTAGAGGTGGAGAGTTCTGATACTATTGATAACGTGAAGGCAAAGATACAGGACAAAGATGGGATTCCACCGGACCAGCAGCGTCTAATCTTTGCTGGGAACCAGCTTGAGGACGGACGCACTCTGGCTGATTACAACATTCAAAAGGAGTCCACCCTCCATCTTGTTCTGAGGCTCTGTGGCGTCACTAGTTACTTTGGCTTTCAATTCAGCTCACATACTTGCTATTCTCTCTTCAGATTCTTGCCAAGTGCGAGTTCCTTAACCCTGGTGTCAGTGTCAAAGATCGTGTTGCTCTTCAAATTATCTAAGAAAAATACTAAATGGGGGTTTCTTGAGGGTGTGAGAGTGTCTGGTGCACCGCCACCTAGAATGGTCTTGGTGCAGCAGTGTATCCGTGATAAAGGTGTATTGGCAGTTCTATGCAACTATGCAGCTCCATTGAAGAAGTTTCAACCTTCAAGATATGTAATAGGCTTATGTACTGCTGTTTGCATTGAAGTTCTGGGTAGTCTTTTCTGCCCCCTTGCACAAGTTACATGGTTTTGGAAATTTAAGCGAGACTATCAAGGTGGGGACTTCTTTTTTGTCTTTTCTCTAGCCAGCAAGATTGCCCCAAGTGTTATTTTTGTCGATGAGGTCGACAGAATGTTAGGAAGACGTGAAACTCCTGGCAAACATGAGACTATGCGTAAAATGAAGAATGAGTTTGTGATGAATTGGGATGGAGGCTTCCATGAAGAAAATAAACAGGGTATATTTGATGCTATTCTTCATGGACGCATTGATTTCTCATCGGAAGCTTGGCCTTCCATATCGAGCAGTGCCAAAAATCTGGTCAAGACGTTACATGCTGACGCCAAGGAATGGCTTTCAGCAGTTGAAGTCCTTAACCAGCTGGCTGTGTTATATCTTCAGCATAAATCTCTAGTCTTATCTTTGAGATCAGATTTGTTGGAAGGATAA 1365 0.4652 MEVIGFNVLGSGDEGVIKSNNNKRLVIRYSRIKHLRPSLPHRSCPAPPSPSPTPVAPPVSATVIPLLSLFLSTWTLTLPPPSSLPVPASLVFIHESAAGSGRKPSVASPSSSVPDASLASAIFVKTLTGKTITLEVESSDTIDNVKAKIQDKDGIPPDQQRLIFAGNQLEDGRTLADYNIQKESTLHLVLRLCGVTSYFGFQFSSHTCYSLFRFLPSASSLTLVSVSKIVLLFKLSKKNTKWGFLEGVRVSGAPPPRMVLVQQCIRDKGVLAVLCNYAAPLKKFQPSRYVIGLCTAVCIEVLGSLFCPLAQVTWFWKFKRDYQGGDFFFVFSLASKIAPSVIFVDEVDRMLGRRETPGKHETMRKMKNEFVMNWDGGFHEENKQGIFDAILHGRIDFSSEAWPSISSSAKNLVKTLHADAKEWLSAVEVLNQLAVLYLQHKSLVLSLRSDLLEG 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g03163 454 Pfam Ubiquitin family 122 192 IPR000626 GO:0005515
Aip08g03163 454 CDD Ubl_ubiquitin 122 194 - -
Aip08g03163 454 ProSiteProfiles Ubiquitin domain profile. 120 195 IPR000626 GO:0005515
Aip08g03163 454 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 333 428 IPR027417 -
Aip08g03163 454 PANTHER - 122 194 - -
Aip08g03163 454 SUPERFAMILY Ubiquitin-like 121 194 IPR029071 -
Aip08g03163 454 Gene3D - 118 198 - -
Aip08g03163 454 ProSitePatterns Ubiquitin domain signature. 146 171 IPR019954 -
Aip08g03163 454 Pfam ATPase family associated with various cellular activities (AAA) 330 379 IPR003959 GO:0005524|GO:0016887
Aip08g03163 454 Gene3D - 330 377 IPR027417 -
Aip08g03163 454 SMART ubq_7 120 191 IPR000626 GO:0005515
Aip08g03163 454 PANTHER UBIQUITIN 122 194 - -
Aip08g03163 454 PRINTS Ubiquitin signature 151 171 IPR019956 -
Aip08g03163 454 PRINTS Ubiquitin signature 130 150 IPR019956 -
Aip08g03163 454 PRINTS Ubiquitin signature 172 193 IPR019956 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g03163 Aip-Chr8 122131497 122134901 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g03163 122 194 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 95.890 1.21e-42 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g03163 - - tua:125530324 141.739