Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g03150 ATGGAGAATCGCCGGCAGGAGGCGGAAGCTATGAAGATGACACAGCACTATTATGGAAGCCCATTATCTGGTTATCAACCACTTCAGTCTGAGCCTCAGCCGTGTGCCATTGACGTGTGTGGTAATCAACCACCTCAGCTACTGTCTCAGCCTCAGCCTCAGCCTCGTCCTTGGTCTCGGCCACTTCAGTCTGAGCCTCAACTGATCATCATCACAGGTCGCAAGGAGGTAGTGCCTGCTGCAGAGGAGGAGGTAGTGCCGGCCGCAGAGGAGGAGGCAGCACCAACAAAGAGTGGATCTCATTGGACCCCAGATGAGCATAGGTTATTTCTTAGAGGGTACCAACAAGAAGGTTTACACTGGACAAGAATTTCAGAATATTATGTCAAAACAAAAACTCCTAGTCAAATTTCCAGTCATGCTCAGAAATATTTTTTACATCAAAAAGAATTAGCAGAAGGAAAAAAGCTAAGGAAAAGCATTTTTGATATTTCTGTTGGAGGACTTTCTGAGTTTACTGGCGATCATTTTAATTCAAAGATGGTGAATGACAAAGTGCATGGTGTTCTTCTACATCACAAGGCTAGGAATGAGCGGTCTCCTGTCACATTTGCAATTGCAGCAGCGGAGACAGAGGATGTGCATATATCAGTATGTCCTGTCTTTGTTATATCTGGTGCTCACAAGGGTATCTCGGCTAAGGATATGTGGAATGAAATTAAACAGCATGGGTCTTTTGACCGCCTGAATATCTTTGAAACTGCCATGCCTTCAGAACCAGGATCGTCAATTGAACTCTTAAAAAAGAGTTGTGTTCCAATGTGGTAG 828 0.4469 MENRRQEAEAMKMTQHYYGSPLSGYQPLQSEPQPCAIDVCGNQPPQLLSQPQPQPRPWSRPLQSEPQLIIITGRKEVVPAAEEEVVPAAEEEAAPTKSGSHWTPDEHRLFLRGYQQEGLHWTRISEYYVKTKTPSQISSHAQKYFLHQKELAEGKKLRKSIFDISVGGLSEFTGDHFNSKMVNDKVHGVLLHHKARNERSPVTFAIAAAETEDVHISVCPVFVISGAHKGISAKDMWNEIKQHGSFDRLNIFETAMPSEPGSSIELLKKSCVPMW 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g03150 275 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 97 148 IPR006447 GO:0003677
Aip08g03150 275 Pfam beta-glucosidase 2, glycosyl-hydrolase family 116 N-term 166 263 IPR024462 -
Aip08g03150 275 SUPERFAMILY Homeodomain-like 95 150 IPR009057 -
Aip08g03150 275 Gene3D - 101 150 - -
Aip08g03150 275 PANTHER NON-LYSOSOMAL GLUCOSYLCERAMIDASE 163 264 - -
Aip08g03150 275 CDD SANT 102 145 IPR001005 -
Aip08g03150 275 PANTHER BILE ACID BETA-GLUCOSIDASE-RELATED 163 264 - -
Aip08g03150 275 ProSiteProfiles Myb-like domain profile. 94 145 IPR001005 -
Aip08g03150 275 Pfam Myb-like DNA-binding domain 101 145 IPR001005 -
Aip08g03150 275 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 94 149 IPR017930 -
Aip08g03150 275 SMART sant 98 147 IPR001005 -
Aip08g03150 275 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g03150 Aip-Chr8 121705190 121709575 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Aip08g03150 Glyco_hydr_116N 2e-12 CL0103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g03150 K17108 - lja:Lj0g3v0199649.2 166.392