Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g03135 ATGGCCTCTGACCATAACTTTCTAGACTTTTTTCTCGAGGAGATAGAGTTTGAGAATGAAAGAGAGGATGATCAGTTTTATTCTTATGATTACAACAATGAATTGTCAAAATCTGAAAGCCAGCTATGTGTCCCTCCAGATCCCGTAGAAGATTTAGAATGGTTTCCGAATTTTCAAGACGATTTAATATCTTTAAAGAACTATGATGACTACATATCATCACAGCCACAGAATGATTATTTTGTTGATGATAACTCCAGTCAATCTCGCGAAAGCTTCGATCAACCGGCTACTCCTCACCAACAAAAGGAAACTAAGTCAAAGCATGAAGATACCGGCGTAAAAGACGATGAGAACGATGAGTATGTGTTGATGGATATGAACGGTCGTAGAAAAAGGAAAAAGTTCAGGACAACCGTTAACAGGAAGCCGAGGAAAAATATGAAATTTGAAATTAAAAGATGTACTCATTGCGAAGTAGAGGAAACTCCTCAATGGAGGAATGGACCCATGGGTCCCAAAACATTGTGCAATGCATGTGGTGTGCGCTACAAGTCTGGTAGGTTGTTACCGGAATATCGTCCCAAGGCAAGTCCATCTTTTGATAGCAGTAAACATTCCAATTATCACAAGAAGATAACAAGGAAGTTTCGTTAA 657 0.3896 MASDHNFLDFFLEEIEFENEREDDQFYSYDYNNELSKSESQLCVPPDPVEDLEWFPNFQDDLISLKNYDDYISSQPQNDYFVDDNSSQSRESFDQPATPHQQKETKSKHEDTGVKDDENDEYVLMDMNGRRKRKKFRTTVNRKPRKNMKFEIKRCTHCEVEETPQWRNGPMGPKTLCNACGVRYKSGRLLPEYRPKASPSFDSSKHSNYHKKITRKFR 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g03135 218 PANTHER GATA TRANSCRIPTION FACTOR 23 216 - -
Aip08g03135 218 PANTHER GATA TRANSCRIPTION FACTOR 4-LIKE 23 216 - -
Aip08g03135 218 ProSiteProfiles GATA-type zinc finger domain profile. 149 185 IPR000679 GO:0006355|GO:0043565
Aip08g03135 218 MobiDBLite consensus disorder prediction 76 100 - -
Aip08g03135 218 MobiDBLite consensus disorder prediction 101 118 - -
Aip08g03135 218 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 154 211 - -
Aip08g03135 218 SMART GATA_3 149 199 IPR000679 GO:0006355|GO:0043565
Aip08g03135 218 MobiDBLite consensus disorder prediction 76 118 - -
Aip08g03135 218 CDD ZnF_GATA 154 205 IPR000679 GO:0006355|GO:0043565
Aip08g03135 218 Pfam GATA zinc finger 155 189 IPR000679 GO:0006355|GO:0043565
Aip08g03135 218 Gene3D - 151 199 IPR013088 GO:0006355|GO:0008270
Aip08g03135 218 MobiDBLite consensus disorder prediction 195 218 - -
Aip08g03135 218 ProSitePatterns GATA-type zinc finger domain. 155 180 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g03135 Aip-Chr8 121549715 121550412 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g03135 18 213 C2C2-Gata Transcription Factor Family AT4G36240 38.614 9.95e-36 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Aip08g03135 GATA 5e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g03135 - - aip:107611719 446.047