Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g03086 ATGGAAGGGGTAACAGTAGGAAGGAAGATTGATTTGATGCTTTACAATTCTTACCAGACTCTTACACACACTTTGATTACTATGTTTGCTAAATACCAAGATTTTGAGGAAGATGGAACAAGTTATAAACTCACCTTTCAGAATGAACAAGGAGATTGGTTGCTTGCTGGACATGTTCCATGGCAATCATTCATTGGTACCGTGCGGCGTTTGGCAATACTAAGGAATGAAAAATGA 237 0.384 MEGVTVGRKIDLMLYNSYQTLTHTLITMFAKYQDFEEDGTSYKLTFQNEQGDWLLAGHVPWQSFIGTVRRLAILRNEK 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g03086 78 PANTHER AUXIN-RESPONSIVE PROTEIN IAA29 1 77 - -
Aip08g03086 78 Gene3D - 1 78 - -
Aip08g03086 78 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 77 IPR003311 GO:0005634|GO:0006355
Aip08g03086 78 Pfam AUX/IAA family 38 76 IPR033389 -
Aip08g03086 78 Pfam AUX/IAA family 1 32 IPR033389 -
Aip08g03086 78 SUPERFAMILY CAD & PB1 domains 1 72 - -
Aip08g03086 78 ProSiteProfiles PB1 domain profile. 1 78 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g03086 Aip-Chr8 120749087 120749831 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g03086 5 74 B3 DNA Binding Superfamily AT1G19220 38.028 9.13e-11 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Aip08g03086 AUX_IAA 7e-11 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g03086 K14484 - aip:107611938 163.31