Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g03067 ATGGTACAGGCAAAGAAGTTCAGAGGTGTGAGGCAGCGCCAGTGGGGCTCCTGGGTGTCAGAGATTCGCCACCCTCTCCTGAAGAGAAGGGTGTGGCTGGGAACATTTGAGACAGCAGAAGCAGCAGCAAGGGCTTATGATCAAGCTGCGATTTTGATGAATGGCCAAAATGCCAAGACCAATTTCCCTTCAACAAAGAACAACCAACAATCTCATCATCATAATAACAATGCAACAACAACAACTTCTTCTTCTTCTTGCAATGATGATTCTTCTTTCTTGTCTCCCAAGGCACTCTCAGAGCTTCTCAGTGCAAAGCTCAAGAAGTGCTGTGGCAAGGATCCTTCTTCTCCTTCCCTCACTTGTCTCCGCCTCGACGCCGACAACTCCCACATCGGCGTCTGGCAAAAGGGCCCCGGAAGACACTCCGATTCCAGTTGGGTCATGAGGGTTGAGCTTGGCAGCAAGAACCAACAAAAACAACACGAGGGTAATAAGGTCATTTTCCCATCTTCACCAAGTAATAACAACATCAATAGCAGCAGCAACAACAACAACAATAATAATAATGTTGTTGTTATTGGAGAGAATGATGATGAAAATAGAATTGAAGAAGAGAACAGGGTTGCCATGCAGATGATTGAAGAGCTTCTGAATTGGAACAACTATCCATTTGGTAGTTCTTCAAGTAACAATAATAATAATTCTCAGCAGCAACAACAAGAAGATCAGAAAAGGAACCTTCCATGTCACAGTTCTTGA 762 0.4436 MVQAKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMNGQNAKTNFPSTKNNQQSHHHNNNATTTTSSSSCNDDSSFLSPKALSELLSAKLKKCCGKDPSSPSLTCLRLDADNSHIGVWQKGPGRHSDSSWVMRVELGSKNQQKQHEGNKVIFPSSPSNNNINSSSNNNNNNNNVVVIGENDDENRIEEENRVAMQMIEELLNWNNYPFGSSSSNNNNNSQQQQQEDQKRNLPCHSS 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g03067 253 MobiDBLite consensus disorder prediction 58 90 - -
Aip08g03067 253 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
Aip08g03067 253 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 222 - -
Aip08g03067 253 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Aip08g03067 253 MobiDBLite consensus disorder prediction 224 253 - -
Aip08g03067 253 CDD AP2 5 63 IPR001471 GO:0003700|GO:0006355
Aip08g03067 253 Gene3D AP2/ERF domain 5 64 IPR036955 GO:0003700|GO:0006355
Aip08g03067 253 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Aip08g03067 253 MobiDBLite consensus disorder prediction 155 193 - -
Aip08g03067 253 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Aip08g03067 253 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SHINE 2 1 222 - -
Aip08g03067 253 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Aip08g03067 253 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g03067 Aip-Chr8 120409040 120410209 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g03067 1 220 AP2-EREBP Transcription Factor Family AT5G25390 54.091 2.73e-70 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip08g03067 AP2 2.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g03067 - - lang:109326202 232.261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g03067 08 120409040 120410209 Aip08g03067 08 120409040 120410209 ECH
Aip03g02471 03 41960428 41961581 Aip08g03067 08 120409040 120410209 ECH