Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g03050 ATGGAAGCAATGCAGAATAATCCTCAACAACACACACGGAGGCATGAAGATGATGAGAATGTGATCTGGGTGGAGGAGAAAGACTTCTCAAAGGGTTTGAATGGCTGTTCAAAAAGTCTCAGTGGGAACCATAGACAGCGCATTACGAGCAATTTGGGGAAGGCCTGCCGGTTAATTGTTAAAGTTGGAGTGGAGTGTGCCATATATGATAGGAAACTTTTCCCATGCTCCAGTCCACTTTACTGGATCTCTGATGTTCCATGTACGGCCGGTCACGCTTTTTTAATTTGTCCTGTAGTCAAATGTGAAATATCGAGAATGTCCCTGAAGAAAGGCAAAAATGAGGGCAGATGCCCTAATCTGATATTGTCCTCTCACCCATGGAGGCTTGGAGGCCGTCCTCATCGGTCATCGTTTGTGTTGTTTGTGTATGTACTTAAAGTGACTGTGGCCTTCAACTTCTGGATCCCTGATAACGTCGGAGGTTGGAATCGAAGTAAACGGTCATCGCGGAGGCCTTGTTTATCTTACCCGCCCGATCGCACGAGTTGGCACCATAGATCGCAGCTCGTCTTAGTAACAGGTGGTGGACATCGCGCAATTTTGTTCGTCGACGCGGTGGTCCCATCGCCCTGTGTAATAATGGCATCAAGTAGCAAGTTTTGCAAGGATGCGTGTATGTGGAATGAGCCTCTTGCGGACAACTGGATGGAGGGCAAGGGTGGTGTGTCGAATTCTCAGGACACAATGTATGATACGAGAGTGGAGGAAGACGCTGAGTTATCCGATTGGGAAGGAAGGGGGGCTTCAATGTTGCCCGTTTTTTTGGGTTTGGATGGGTTGCAAGCAGAAGATGTGCTTGAAATGGAGTTTTCTTCACCTCAGGAGGCAAGCGGCTTCTATAACAATTACAGCCGACTAAAGCGGTTTGCATCAAGGCGAGGCAAGACGGTTAGAAACACTGCCGGAGAGATAGTGTGGTACACGTTTGTTTGTAATAGGCAAGGATTTCGAGAGAAGAAATGGTTGGAAAAGGTTGATCGCAAAAGGGAGCATAAGGTTGTAACCCGATGCGGATGCATGGCGGAGATGAGGATAAAGAGGAAAGAGGGTAGTGGGAGGTGGTATGTGTCGCGTTTTGTCGAGGAGCATAACCACGAACTTGCGTATGGGAAGCTTGTTGATTATCTGCGGTCACACAGGAAGATATCTGAGGTAGAAGTTGCTCAGCTAACAAGCATGAGGGAGATTGGGATTAGCATACCTAAGATTTATGAGTCTTTCGCAGCACAACTAGGGGGCTTTAATCTGGTAACATTCACAAAGCAAGATATGTATAATGAGATACGGAAACAGAGAGGTCTGCAAGGCGGAGACGTAAGTGCAGCTATTAGGTACTTGGAAGGTCTGGCACGCATGGATGGGAAAATGTTTTGGCGGTACAAGTTGGGGGCAGGGCAACACCTATGCAACTTGTTTTGGAGCGACAGTCGTTGTCAGGAAGATTATGGGATATTCGGCGATGTGCTAGCATTCGATGCTACCTATGGCCGCAACAAGTACAACCTACCTGTTGTAGTCTTTTCCGGAGTAAACCACCACAACCAGACATGCGTATTCGGAACAGCAATGGTCTCATGCGAATCGCAGGAGTCATATATTTGGGTTCTTCGCCAGTTCCTGGAATGCATGCAAGGTAAGGCACCGCATTCAGTCATCACGGATGGCGACCCGGCCATGCGGATAGCAATCCGGTCCGTTTTTCCTGAGGCACATCATCGTTTGTGTGCCTGGCATCTGCTGAGGAACGCGACTGTTAACATAAGCGACCCGAGATTCACACAAATGTTTAGACACTGCATGCTGGCAGATATGGAAATCGAGGAGTTCGAAGCGCATTGGGAGTCAATGCTCAACGAGTGCGGTGTTAGGGAGGTTGAGTGGGTTAAGGAGTTGTACAGCAAAAAGCACGCTTGGGCAACCGCATACATTCGTGGTAGATTTTTTGCTGGAGTACGGACAACCTCTAGGTGCGAGTCACTGCATGCCAAACTAGGTAGGTTTGTTGAGAGCAGGTATGGGGTGTTAGAATTTGTCAGAAATTTTCAAAGGTGTGTGGATTTTCTTCGTGACACGGAGGACGAGCTAGACTTTCGTTCATGGTACGGAACACCTGTGCTACAAACAGAGTTTGTTGAGCTGGAAAAGTCTGGATGGACTGTGTTCACCCGCGAAATGTTTGTCAGATTCCGGGATAGCCTGAAACGGTGTGTTCGTGTTAGAATATGTGAATTTAATGACAGTGAGAACCCTCATACATATACTCTCCAGAAGTATCGGAGGCCTGAGATGAATTGGAAGGTTTATAGGGACCATATCTCGAACAGATTTAGCTGCAGCTGCATGCGTATGGAGTCGTTTGGCATTCCTTGTGTGCATATCCTTTCCGTCTGTGTTATGCTAGACTTGGTGGAAATCCCTGAAAGCCTTGTGCTGCGTAGGTGGTCTAAGGCAGCCAAATTGGAGATACATAACCAATGTGTTGAGCAACAGACTGCTGACCCAAGTGTGACCTATAGGACACGATTGGGTGCTTTCTCCCAGCTGTGTAAGCGTTTAGGGCGCGTTGCTTGCATGAGTGATGAAGACTTCAAGCTTTACTCAAAGAAGCTTCTGAGCGATGCTCTCTTCCTTGAAATAAAGTATGGCTTAAGACCATCAACGGATGATATCACAACAGCAAATGATTGCGGGGTGAAAGACCCCATTCGTGTCAGAACAAAAGGCACTGGTCGGATGAGCCAAGCAGGCGGTTCTGCGCCGAAAACTAAAAGAAAGTGCAGCACATGCGGGAAGCTAGGGCACCGAAGGACTAGATGCCCCAATGGAGCCGCGCAAGCTTCAACGAGGATCAATGAATCACATGGTGGAAGAAACAAACGCAAGCGATCAAAGCAGGTACCCGTCGTTGTCCGAGATAATTGTCAGCCTGAAAATGCATGTCAAGCCGGAAGCGACAAATGGGAACACTTTTCGCTTGCAGACCCATGA 3051 0.4789 MEAMQNNPQQHTRRHEDDENVIWVEEKDFSKGLNGCSKSLSGNHRQRITSNLGKACRLIVKVGVECAIYDRKLFPCSSPLYWISDVPCTAGHAFLICPVVKCEISRMSLKKGKNEGRCPNLILSSHPWRLGGRPHRSSFVLFVYVLKVTVAFNFWIPDNVGGWNRSKRSSRRPCLSYPPDRTSWHHRSQLVLVTGGGHRAILFVDAVVPSPCVIMASSSKFCKDACMWNEPLADNWMEGKGGVSNSQDTMYDTRVEEDAELSDWEGRGASMLPVFLGLDGLQAEDVLEMEFSSPQEASGFYNNYSRLKRFASRRGKTVRNTAGEIVWYTFVCNRQGFREKKWLEKVDRKREHKVVTRCGCMAEMRIKRKEGSGRWYVSRFVEEHNHELAYGKLVDYLRSHRKISEVEVAQLTSMREIGISIPKIYESFAAQLGGFNLVTFTKQDMYNEIRKQRGLQGGDVSAAIRYLEGLARMDGKMFWRYKLGAGQHLCNLFWSDSRCQEDYGIFGDVLAFDATYGRNKYNLPVVVFSGVNHHNQTCVFGTAMVSCESQESYIWVLRQFLECMQGKAPHSVITDGDPAMRIAIRSVFPEAHHRLCAWHLLRNATVNISDPRFTQMFRHCMLADMEIEEFEAHWESMLNECGVREVEWVKELYSKKHAWATAYIRGRFFAGVRTTSRCESLHAKLGRFVESRYGVLEFVRNFQRCVDFLRDTEDELDFRSWYGTPVLQTEFVELEKSGWTVFTREMFVRFRDSLKRCVRVRICEFNDSENPHTYTLQKYRRPEMNWKVYRDHISNRFSCSCMRMESFGIPCVHILSVCVMLDLVEIPESLVLRRWSKAAKLEIHNQCVEQQTADPSVTYRTRLGAFSQLCKRLGRVACMSDEDFKLYSKKLLSDALFLEIKYGLRPSTDDITTANDCGVKDPIRVRTKGTGRMSQAGGSAPKTKRKCSTCGKLGHRRTRCPNGAAQASTRINESHGGRNKRKRSKQVPVVVRDNCQPENACQAGSDKWEHFSLADP 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g03050 1016 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 285 862 IPR031052 GO:0006355
Aip08g03050 1016 SUPERFAMILY Retrovirus zinc finger-like domains 926 965 IPR036875 GO:0003676|GO:0008270
Aip08g03050 1016 ProSiteProfiles Zinc finger CCHC-type profile. 945 962 IPR001878 GO:0003676|GO:0008270
Aip08g03050 1016 SMART 26again6 797 824 IPR006564 GO:0008270
Aip08g03050 1016 Pfam SWIM zinc finger 798 820 IPR007527 GO:0008270
Aip08g03050 1016 PANTHER OS02G0262500 PROTEIN 285 862 - -
Aip08g03050 1016 MobiDBLite consensus disorder prediction 959 988 - -
Aip08g03050 1016 MobiDBLite consensus disorder prediction 929 948 - -
Aip08g03050 1016 ProSiteProfiles Zinc finger SWIM-type profile. 789 822 IPR007527 GO:0008270
Aip08g03050 1016 Pfam FAR1 DNA-binding domain 300 389 IPR004330 -
Aip08g03050 1016 Pfam MULE transposase domain 509 603 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g03050 Aip-Chr8 119985874 119993153 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Aip08g03050 MULE 6.2e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g03050 - - aip:107611673 1867.05