Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g03046 ATGTTTCTTCCTTTTTCATCCCAGGATTCTTCCAATAATCTCAACAATAATAATGATGATCTAGAATCTTCCAAGAACAAGAACAATGAAGACACTACTACTATTCCCTCCCCTTTTGAATCCTCCAATCCCAGCATCAGCAATGATGTAGAAAATTCATCTCCATCAAAGCATCATCATGATCATGATCTTAATGATGATGATTACTTTCTTGGTGAATCATACACACCAGAGCTTGTTCTGTCACCAGAAACCCAATCAATCTTATTAAGTGGCCTACGTATTGGAGACGATGGTGATGTTCTTGAAGATCTTTGTGATAACAACTTCGAATTTAATGTGGAATCATCACAAGAATGGAGAGATTCCAATTTGTTTGCAGATGAGATTCTAGGAATCGAACCTTCCCTTGATCATTATTGTTCAACCTACCCCACGGGTAATGAAGAGGACATTGACCTTATAGAAACAGTGCAATCTGAAGATGAAGTGAATAATAGAAACCTTGTAATAATTGATGCACCAATTCAGGAAGAGGAAGCACCAAACTTCAAGTTGAAGCCTTTTGGTTTGCATTTGAATAGCATCATAAAATCTACAAAAAGGGTTCAACCTGAGACACATGAAAATGTTGTAGTTGGGAGTAGTAGTAGTAATAATAAAATAAAAAGCATTTTGATCTCACAAGGTAGCAATGGAAAATCAGTAGTAAGAGTTGTTGTTGATGAGACTCAGATCCATCAAGACACCACTTCCAATGATAGTGTTCCCATTTCTCATGATCTTAACAAGAGAATAATCCAAGACAGTAGTGAGAGTAATAATGGTTGTACATGTAAGAAGAGTGCATGCTTGCTCCTGTACTGTGAATGTTTTGCTGCTAAAGGTTATTGTGCAGAATGTTGTACTTGTGAAGGATGCTTAAACAGAGAAGAACATGAAGACAAAGTTAATGATGCTAGGGACAAAATCAAATCTCGTAATCCATTTGCATTTTCTCCTGAGATGGTTCCACAACCCACTCACATTCCATCGGCTAGTAACCAAGAAGAAGAAGATGAAGCAGGCAAAGATACATCAAGAGAATCGAAACCAAGTAAATTCTTCACTTATTTGCCACGTGTCGGTTTAGTAGAATCAAACACCATCAGCACTAATTCTACAAAACATGATGCTGGTGATGACAACATTTATAAAGAGAAACTTAACCAAACTGGTGGAGGATGCAAAAAACATGCATCAAACACAAGTGATGGTAAAAGAGCATGTACATGTAAGAAGAATAAATGTCTGAACCTTTATTGTGAATGTTTTCATGGTGAAATCTACTGTTCTGAGGCTTGTGCTTGCGAAGGGTGCTTAAATAGAGAAGAACATTTACACAAAATTCATGAAGCTAAGGAATATATCAAAAGGCATTATCCATTAGCATTTGCTCCAAGGATTCTTCAAACTCATCTTTCCTCCCCCAATAATATGGATAATGAAAATGTTAAGACAGCAACAGCATCATCATCAGCAAAGCACAGAAGAGATTCAGGTCATAAGCAAGATGCAGAAATGGATGGCAATGAAGAGCAAATAGTCCCACCTCCATCAACATGA 1605 0.3707 MFLPFSSQDSSNNLNNNNDDLESSKNKNNEDTTTIPSPFESSNPSISNDVENSSPSKHHHDHDLNDDDYFLGESYTPELVLSPETQSILLSGLRIGDDGDVLEDLCDNNFEFNVESSQEWRDSNLFADEILGIEPSLDHYCSTYPTGNEEDIDLIETVQSEDEVNNRNLVIIDAPIQEEEAPNFKLKPFGLHLNSIIKSTKRVQPETHENVVVGSSSSNNKIKSILISQGSNGKSVVRVVVDETQIHQDTTSNDSVPISHDLNKRIIQDSSESNNGCTCKKSACLLLYCECFAAKGYCAECCTCEGCLNREEHEDKVNDARDKIKSRNPFAFSPEMVPQPTHIPSASNQEEEDEAGKDTSRESKPSKFFTYLPRVGLVESNTISTNSTKHDAGDDNIYKEKLNQTGGGCKKHASNTSDGKRACTCKKNKCLNLYCECFHGEIYCSEACACEGCLNREEHLHKIHEAKEYIKRHYPLAFAPRILQTHLSSPNNMDNENVKTATASSSAKHRRDSGHKQDAEMDGNEEQIVPPPST 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g03046 534 MobiDBLite consensus disorder prediction 347 364 - -
Aip08g03046 534 MobiDBLite consensus disorder prediction 327 364 - -
Aip08g03046 534 MobiDBLite consensus disorder prediction 1 52 - -
Aip08g03046 534 MobiDBLite consensus disorder prediction 1 69 - -
Aip08g03046 534 MobiDBLite consensus disorder prediction 505 523 - -
Aip08g03046 534 MobiDBLite consensus disorder prediction 487 504 - -
Aip08g03046 534 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 351 511 IPR044522 GO:0003700
Aip08g03046 534 MobiDBLite consensus disorder prediction 487 534 - -
Aip08g03046 534 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 67 350 IPR044522 GO:0003700
Aip08g03046 534 Coils Coil 11 31 - -
Aip08g03046 534 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 4 67 350 - -
Aip08g03046 534 ProSiteProfiles CRC domain profile. 273 458 IPR005172 -
Aip08g03046 534 MobiDBLite consensus disorder prediction 53 69 - -
Aip08g03046 534 SMART CXC_2 418 459 IPR033467 -
Aip08g03046 534 SMART CXC_2 272 313 IPR033467 -
Aip08g03046 534 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 421 456 IPR005172 -
Aip08g03046 534 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 275 310 IPR005172 -
Aip08g03046 534 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 4 351 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g03046 Aip-Chr8 119900234 119904191 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g03046 400 511 CPP Transcription Factor Family AT4G14770 33.333 6.50e-15 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Aip08g03046 TCR 2.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g03046 - K21776 sspl:121783785 140.198