Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g03000 ATGTCTCAAACTAACTGGGAAGCTGATAAGATGTTAGATGTATATATCCATGATTACCTGGTAAAGAGGGATTTGAAGGCTTCTGCTCAGGCTTTTCAAGCTGAGGGGAAAGTTTCCTCTGACCCTGTTGCTATTGATGCCCCGGGAGGTTTTCTGTTCGAGTGGTGGTCGGTTTTCTGGGACATTTTTATTGCGAGGACTAATGAGAAGCACTCGGAGGTTGCAGCCTCTTATATTGAGACACAACTAATGAAGGCCAGGGAGCAACAGCAGCAGCAACCACAGCAGCCGCAACCGCAGCAGTCGCAGCATCAACAACAGCAGCAGCAACAGCAACACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAACAACAACAACAGCAGCAGCAGCCGCAGCAACCACAACAACAGCAGCCACCTCAGCCACAACCGCAGCAGCAGCAGCAACCACCGCCACAACAACAGCAAGGTAGGGACAGGGCTAATCTCATAAACGGCAATACGAATGGGTTAGTTGGGAACCAGGGAACTGCCAATGCACTAGCAACAAAGATGTATGAGGAGAGGCTAAAGAGAGATTCTTTGGATGAAGCAGCAATGAAGCAAAGATTCGGTGGTGAGAACATGGGTCAAATTTTGGATCCTAATCATGCCTCAATTTTGAAGTCAGCTGCTGCTACTGGCCAGCCTTCAGGGCAAGTTTTGCATGGTGCTACTGCGGCTGGCATGCCTCCACAAGTTCAAGCTCGTAGTCAGCAATTAGCAGGGTCTACTCCAGATATAAAGAGTGAGATTAATCCTGTACTGAACCCTAGAGCTGCGGGTGCTGAAGGATCATTGATGGGAATTCCTGGACCAAATCAAGGTAGTAACAATTTGACTTTGAAGGGATGGCCACTCACAGGTTTGGAGCAACTCCGCTCTGGTCTACTCCAGCAACAAAAGCCTTTCATGCAGGCTCCTCAGCCGTTTCATCAACTTCAAATGTTGACACCACAGCATCAGCAACAGATAATGCTTGCGCAGCAAGGCTTGGCATCTCCATCTGCCAGTGATGACAATAGAAGACTCAGAATGCTGTTGAACAATAGGAGTATGAGCCTAAACAAGGATGGTCTTTCAAATCCTGTTGATGTAGTGCCAAATGTTGGATCTCCACTTCAAGGTGGTGGCCCTCCTTTTCCTCGTGGAGATACAGATATGCTAATGAAGTTGAAATTGGCTCAAATGCAGCAGCAACATCAGCAACAGCCAAACAGCAATCCACAGCTGCAGCAACTTCAACAGCATGCTCTCTCAAATCAGCAATCTCAGACTTCAAGCCATAACATGCATCAGCAAGATAAAGTAGGGGGAGGTGGTGGCAGTGTTACTGCGGACGGTAGCATGTCGAACTCATTTAGAGGCAATGATCAGGCCTCGAAAAACCAGATTGGGAGAAAGAGAAAGCAGCCTGTATCTTCTTCAGGTCCTGCCAATAGTACAGGAACTGCTAATACAACAGGTCCATCACCAAGTTCGGCACCCTCGACTCCCTCGACTCATACACCCGTAGATATGCCGTCTATGACTGGTACTACTTCTTCAAAGCCATTAATGATGTTCAGCACTGACGGCACCGGGACTCTTACATCACCTTCAAACCAATTGGCTGATGTGGATCGCTTTGTGGAGGACGGATCTCTTGATGAAAATGTTGAGTCTTTTTTATCTCATGATGATACGGATCCTAGAGATACGGTCGGTCGTTGTATGGATGTAAGCAAAGGCTTCACATTTTCTGATGTAAATTCTGTACGTGCTAGCACAAGCAAAGTTGTATGTTGTCATTTTTCATCTGATGGGAAATTACTTGCAAGCGGTGGGCACGACAAGAAGGCTGTTTTATGGCACACGGATACCTTGAAGCAGAAGGCTGTTCTTGAAGAGCATTCGTCTATGATCACCGATGTTCGTTTTAGTCCAAGCATGCCTCGTTTAGCAACATCTTCATTTGACAAAACTGTCAGGGTTTGGGACATTGATAATCCTGGTTATTCGCTTCGCACCTTTACAGGACATTCAGCATCTGTAATGTCCCTAGATTTCCATCCAAATAAAGAGGATCTTATCTGCTCTTGTGATGGTGACGGCGAGATACGATATTGGAGCATAAATAATGGAAGTTGTGCAAGAGTCTTCAAGGGTGGCACCGCCCAGATGAGATTTCAACCACGTCTAGGGAGGTACCTGGCTGCAGCTGCAGAGAATGTTGTTTCTATACTTGATGTGGAGACACAAGGATGCCGAAATTCATTAAAGGGCCACACGAAGCCGATACATTCCGTGTGTTGGGACCCTTCCGGGGAGTTGCTGGCATCCGTGAGTGAGGACTCGGTCCGGGTTTGGACTCTAGGAACCGGGAGTGAAGGGGAATGTGTTCATGATCTTAGCAGTAATGGCAGTAAGTTTCAATCATGTGTCTTTCACCCGTCTTATCCGTCGTTGCTCGTCATTGGCTGTTACCAGTCATTGGAGCTGTGGAACATGACGGAGAACAAGACGATGACTCTGACAGCTCACGAAGGTCTCATCGCCTCCCTCGCCGGTTCGACTGTAAATGGTTTGGTTGCTTCGGCGAGTCATGACAAGTTCATCAAGCTCTGGAAGTGA 2790 0.4563 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLMKAREQQQQQPQQPQPQQSQHQQQQQQQQHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQQQQQQQQQQQQQQQQQQQQQPQQPQQQQPPQPQPQQQQQPPPQQQQGRDRANLINGNTNGLVGNQGTANALATKMYEERLKRDSLDEAAMKQRFGGENMGQILDPNHASILKSAAATGQPSGQVLHGATAAGMPPQVQARSQQLAGSTPDIKSEINPVLNPRAAGAEGSLMGIPGPNQGSNNLTLKGWPLTGLEQLRSGLLQQQKPFMQAPQPFHQLQMLTPQHQQQIMLAQQGLASPSASDDNRRLRMLLNNRSMSLNKDGLSNPVDVVPNVGSPLQGGGPPFPRGDTDMLMKLKLAQMQQQHQQQPNSNPQLQQLQQHALSNQQSQTSSHNMHQQDKVGGGGGSVTADGSMSNSFRGNDQASKNQIGRKRKQPVSSSGPANSTGTANTTGPSPSSAPSTPSTHTPVDMPSMTGTTSSKPLMMFSTDGTGTLTSPSNQLADVDRFVEDGSLDENVESFLSHDDTDPRDTVGRCMDVSKGFTFSDVNSVRASTSKVVCCHFSSDGKLLASGGHDKKAVLWHTDTLKQKAVLEEHSSMITDVRFSPSMPRLATSSFDKTVRVWDIDNPGYSLRTFTGHSASVMSLDFHPNKEDLICSCDGDGEIRYWSINNGSCARVFKGGTAQMRFQPRLGRYLAAAAENVVSILDVETQGCRNSLKGHTKPIHSVCWDPSGELLASVSEDSVRVWTLGTGSEGECVHDLSSNGSKFQSCVFHPSYPSLLVIGCYQSLELWNMTENKTMTLTAHEGLIASLAGSTVNGLVASASHDKFIKLWK 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g03000 929 ProSiteProfiles Trp-Asp (WD) repeats profile. 812 852 IPR001680 GO:0005515
Aip08g03000 929 Gene3D - 623 775 IPR015943 GO:0005515
Aip08g03000 929 MobiDBLite consensus disorder prediction 414 593 - -
Aip08g03000 929 MobiDBLite consensus disorder prediction 85 144 - -
Aip08g03000 929 MobiDBLite consensus disorder prediction 322 342 - -
Aip08g03000 929 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 153 929 IPR044716 GO:0003714
Aip08g03000 929 MobiDBLite consensus disorder prediction 171 222 - -
Aip08g03000 929 ProSiteProfiles Trp-Asp (WD) repeats profile. 730 772 IPR001680 GO:0005515
Aip08g03000 929 MobiDBLite consensus disorder prediction 196 222 - -
Aip08g03000 929 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 730 768 - -
Aip08g03000 929 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 687 722 - -
Aip08g03000 929 MobiDBLite consensus disorder prediction 181 195 - -
Aip08g03000 929 MobiDBLite consensus disorder prediction 452 493 - -
Aip08g03000 929 ProSiteProfiles Trp-Asp (WD) repeats profile. 897 929 IPR001680 GO:0005515
Aip08g03000 929 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 1 115 - -
Aip08g03000 929 SMART Lish 8 40 IPR006594 GO:0005515
Aip08g03000 929 Coils Coil 155 176 - -
Aip08g03000 929 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 115 IPR044716 GO:0003714
Aip08g03000 929 CDD WD40 645 929 - -
Aip08g03000 929 MobiDBLite consensus disorder prediction 504 593 - -
Aip08g03000 929 SMART WD40_4 723 763 IPR001680 GO:0005515
Aip08g03000 929 SMART WD40_4 890 929 IPR001680 GO:0005515
Aip08g03000 929 SMART WD40_4 680 719 IPR001680 GO:0005515
Aip08g03000 929 SMART WD40_4 849 888 IPR001680 GO:0005515
Aip08g03000 929 SMART WD40_4 766 802 IPR001680 GO:0005515
Aip08g03000 929 SMART WD40_4 805 843 IPR001680 GO:0005515
Aip08g03000 929 SMART WD40_4 638 677 IPR001680 GO:0005515
Aip08g03000 929 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Aip08g03000 929 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 897 929 - -
Aip08g03000 929 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 153 929 - -
Aip08g03000 929 Pfam WD domain, G-beta repeat 808 842 IPR001680 GO:0005515
Aip08g03000 929 Pfam WD domain, G-beta repeat 726 763 IPR001680 GO:0005515
Aip08g03000 929 Pfam WD domain, G-beta repeat 647 676 IPR001680 GO:0005515
Aip08g03000 929 Pfam WD domain, G-beta repeat 685 719 IPR001680 GO:0005515
Aip08g03000 929 Pfam WD domain, G-beta repeat 892 929 IPR001680 GO:0005515
Aip08g03000 929 MobiDBLite consensus disorder prediction 85 115 - -
Aip08g03000 929 ProSitePatterns Trp-Asp (WD) repeats signature. 706 720 IPR019775 -
Aip08g03000 929 SUPERFAMILY WD40 repeat-like 643 929 IPR036322 GO:0005515
Aip08g03000 929 Gene3D - 776 929 IPR015943 GO:0005515
Aip08g03000 929 Pfam LisH 10 36 IPR006594 GO:0005515
Aip08g03000 929 ProSiteProfiles Trp-Asp (WD) repeats profile. 687 722 IPR001680 GO:0005515
Aip08g03000 929 ProSiteProfiles Trp-Asp (WD) repeats profile. 645 686 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g03000 Aip-Chr8 118938851 118948628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g03000 724 928 Miscellaneous Gene Families AT5G08390 25.714 2.10e-13 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Aip08g03000 WD40 0.061 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g03000 - - gmx:100816263 1169.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g03000 08 118938851 118948628 Aip08g03000 08 118938851 118948628 ECH
Aip06g03305 06 129455202 129465029 Aip08g03000 08 118938851 118948628 PCT