Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g02996 ATGAGCTTGCCAAATAGCGGGAGGGAGGAGGTTATAATACAAAAGAGTAGCACAATGGTCTTAGGATCAGTTGGAGGGATACCACCCTACTCAAGACCATCATTTAAAAATGAGCAGAAACATGTACTTAGAGGAAGTTTCACAAGAACAGGTTCTGATGAGAACAAAACTTCTGTAGTTATTGATCCCCTGGATAAGAGAAAACAAGTGCTTAATGATGTAACTAACATCTGTAGTAATGCTTCAACATTTCAGGCAAGAAGAGTTAATAAGAAGAAAAACACAAAGCTGGCATCAAATGTCTCATTTGAAGTTTCAACATCACAAGGGGATGTTAGAGCAAAGTTAACTAAAGAAGTATCCACAATAAGGGTGGTAGAATCACATGACACCACTGGTGAACATTGTATGTCCAATAGCATAAGAGAACATGGTATCACAGACAACGTGCTTTCGGTGCAAGACACTGCGAAATCTGATGGTCCGAGCTCTCCAAATAAAGACATAGATATGATTTGTGAGAAACTAGGAGCATCAGATTGCTTGGCCATTGTGGACATTGATTCCGAGATAAAGGATCCTGAAGTTTGGAGTTCTTATGCACCTGAAATATACAATAATATTCGTGTCACAGAGCTCTCAAGGAGACCAATATCGAATTACATGGGAGAGTTGCAGCAAGATATCAGTCCTACCATGAGGGGAATTTTGATTGATTGGCTTGTGGAGGTTACCGAGGAATATAACTTGGTTCCAGACACACTTTACCTTACAGTAAACCTCATTGATAGGTATCTCTCAGCAAAATTGATGCAGAAACAAAGACTCCAGTTGCTTGGTGTTACTTGCATGCTCATTGCATCAAAGTATGAAGAGATTTGTGCTCCTAGAGTGGAGGAATTTTGCTTCATCACAGATAACACTTACACAAAAGAAGAGGTATTGAAAATGGAGAGTGAAGTTCTAAACATTTTGCATTTTCATTTATCTGTTCCAACAACCAAAACATTTCTGAGGAGATTCATCCAAGCGGCACAATCTTCATACAAGGTCCCTCACATTGAATTGGAATTCCTGGCAAATTATTTAGCAGAGCTTACCCTTGTTGAGTACAGTTTCTTGCAGTTTCTACCTTCCCTTATAGCTGCATCTGCTGTGTTCCTTGCAAGATGGACTTTAAACCAATCAGAACATCCATGGAATCTAACCCTGGAGCACTATACAAATTACAAAGCTTCAGAGCTTGAAACTGTTGTTCTTGCACTTGTAGATTTGCAGCTCAACACCAAAGCTAGTTCCCTAAATGCTATACGTGAAAAGTATAAACAACATAAGTTCAATTGTGTGGCAACACTGTCTCCAAATCCAAAACCTGTGCAATCGCTCTTCCAAGTTCAAGTGTAA 1404 0.3939 MSLPNSGREEVIIQKSSTMVLGSVGGIPPYSRPSFKNEQKHVLRGSFTRTGSDENKTSVVIDPLDKRKQVLNDVTNICSNASTFQARRVNKKKNTKLASNVSFEVSTSQGDVRAKLTKEVSTIRVVESHDTTGEHCMSNSIREHGITDNVLSVQDTAKSDGPSSPNKDIDMICEKLGASDCLAIVDIDSEIKDPEVWSSYAPEIYNNIRVTELSRRPISNYMGELQQDISPTMRGILIDWLVEVTEEYNLVPDTLYLTVNLIDRYLSAKLMQKQRLQLLGVTCMLIASKYEEICAPRVEEFCFITDNTYTKEEVLKMESEVLNILHFHLSVPTTKTFLRRFIQAAQSSYKVPHIELEFLANYLAELTLVEYSFLQFLPSLIAASAVFLARWTLNQSEHPWNLTLEHYTNYKASELETVVLALVDLQLNTKASSLNAIREKYKQHKFNCVATLSPNPKPVQSLFQVQV 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g02996 467 SUPERFAMILY Cyclin-like 331 454 IPR036915 -
Aip08g02996 467 SMART Cyclin_C_2 332 455 IPR004367 -
Aip08g02996 467 Pfam Cyclin, C-terminal domain 332 454 IPR004367 -
Aip08g02996 467 Gene3D - 217 330 - -
Aip08g02996 467 PIRSF Cyclin_A_B_D_E 33 466 IPR039361 -
Aip08g02996 467 Pfam Cyclin, N-terminal domain 203 329 IPR006671 -
Aip08g02996 467 CDD CYCLIN 330 423 IPR013763 -
Aip08g02996 467 Gene3D - 203 451 - -
Aip08g02996 467 ProSitePatterns Cyclins signature. 234 265 IPR006671 -
Aip08g02996 467 SUPERFAMILY Cyclin-like 193 329 IPR036915 -
Aip08g02996 467 PANTHER CYCLINS 46 463 IPR039361 -
Aip08g02996 467 CDD CYCLIN 233 322 IPR013763 -
Aip08g02996 467 PANTHER CYCLIN-A2-4 46 463 - -
Aip08g02996 467 SMART cyclin_7 336 424 IPR013763 -
Aip08g02996 467 SMART cyclin_7 239 323 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g02996 Aip-Chr8 118806790 118816727 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g02996 11 463 Core Cell Cycle Gene Families AT5G25380 52.620 2.81e-150 434
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g02996 K06627 - gmx:547780 609.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g02996 08 118806790 118816727 Aip08g02996 08 118806790 118816727 ECH