Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g02986 ATGGCGGAAGATAATAACGAAGTCACACAAACATTTAAGGATTTGGGATTATCTGAGGAATTGGTGGAAACTTGTGATAAATTAGGTTGGAAAAATCCATTGAAGATACAATCAGAAGCGATTCCTCTTGCACTACAAGGAAAAGATGTGATTGGACTCGCCCAAACGGGTTCTGGAAAAACTGGAGCTTTTGCACTTCCCATATTGCATGCCCTCTTAGAAGCGCCACGCCCCAATGATTTCTTCGCATGTGTGTTGTCTCCCACAAGAGAACTTGCTATTCAAATTGCTGAGCAGTTTGAAGCTTTAGGGTCTGGGATCGGTGTCAAGTGTGCTGTGCTTGTTGGAGGGATCGACATGGTACAGCAATCCATCAAGATAGCAAAGCAGCCTCATATTATTGTCGGAACACCAGGACGCGTTTTAGATCACCTCAAAAACACCAAGGGATTTTCTCTTAATAGATTAAAATATTTGGTCCTAGATGAGGCGGACAGGCTGTTGAATGAGGACTTTGAGGAATCACTTAATGAGATTATACAATTGATTCCTCGTGAGCGGAGAACATTTCTGTTTTCTGCTACAATGACTAAGAAGGTCCAAAAGCTCCAAAGAGTTTGTTTAAGGAATCCTGTGAAGATTGAAGCAGCCTCTAAGTATTCTACTGTTGACACACTGAAGCAGCAATATCGTTTCTTACCTGCCAAACACAAGGATTGCTACCTTGTATACATTCTCACTGAAATGGCTGGAAGTACATCAATGGTGTTCACTCGTACATGTGATTCAACTCGTCTTCTTGCTTTGATTCTTAGTAATCTTGGTCTAAAAGCCATCCCAATTAATGGTCATATGACCCAGTCAAAAAGGCTTGGAGCCTTGAATTTATTCAAGTCTGGGGCTCGCAATATTCTCATTTGTACTGATGTAGCTAGTAGAGGATTGGATATTCCAACAGTAGATGTTGTGATTAACTATGACATCCCCACAAACTCCAAAGTAAGATGTGCTATAATTAATCTAACTTTTGAATTAGCTTCATGTTATTTGTTCTACAAATTCTAG 1065 0.4028 MAEDNNEVTQTFKDLGLSEELVETCDKLGWKNPLKIQSEAIPLALQGKDVIGLAQTGSGKTGAFALPILHALLEAPRPNDFFACVLSPTRELAIQIAEQFEALGSGIGVKCAVLVGGIDMVQQSIKIAKQPHIIVGTPGRVLDHLKNTKGFSLNRLKYLVLDEADRLLNEDFEESLNEIIQLIPRERRTFLFSATMTKKVQKLQRVCLRNPVKIEAASKYSTVDTLKQQYRFLPAKHKDCYLVYILTEMAGSTSMVFTRTCDSTRLLALILSNLGLKAIPINGHMTQSKRLGALNLFKSGARNILICTDVASRGLDIPTVDVVINYDIPTNSKVRCAIINLTFELASCYLFYKF 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g02986 354 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 160 168 IPR000629 -
Aip08g02986 354 CDD DEADc_DDX47 11 215 IPR044765 GO:0005524
Aip08g02986 354 CDD SF2_C_DEAD 226 333 - -
Aip08g02986 354 SMART helicmild6 265 337 IPR001650 -
Aip08g02986 354 Gene3D - 220 337 IPR027417 -
Aip08g02986 354 Pfam DEAD/DEAH box helicase 35 203 IPR011545 GO:0003676|GO:0005524
Aip08g02986 354 PANTHER BNAC02G41920D PROTEIN 4 333 - -
Aip08g02986 354 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 10 38 IPR014014 GO:0003724
Aip08g02986 354 PANTHER RNA HELICASE 4 333 - -
Aip08g02986 354 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 332 IPR027417 -
Aip08g02986 354 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 41 214 IPR014001 -
Aip08g02986 354 Gene3D - 1 219 IPR027417 -
Aip08g02986 354 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 241 354 IPR001650 -
Aip08g02986 354 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 214 IPR027417 -
Aip08g02986 354 Pfam Helicase conserved C-terminal domain 241 332 IPR001650 -
Aip08g02986 354 SMART ultradead3 29 229 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g02986 Aip-Chr8 118679404 118685768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g02986 4 334 Eukaryotic Initiation Factors Gene Family AT3G19760 30.149 1.11e-49 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g02986 K14777 - gmx:100775796 606.29