Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g02973 ATGTACTCATCCGAGGGAGAAGTATACAACCTGTCATCAAATGCAGAGTGCATGCATGGAGAAGAATTGAGTCAATCAAAAGAACATGAAAAGATCAATGACTTGCGAGAAAGAGGATATATGGAACACGGATGTCAACATTACCGGAAAAGATGCCGTATTAGGGCCCCCTGCTGCAACGAGATTTTCCACTGTCGCCACTGTCATAATGAGGCAAAGTATGATATCAGGATTGTTCCGAAGCTTAGACATGACATTCCCCGTCATCAAGTTAAACATGTGATATGTTCACTTTGTGGGATTGAACAAGAGGTTCAGCAAAACTGCATTAATTGTGGAGTTTGTATGGGCAAGTACTTTTGCGGGATATGCAAGCTTTTTGATGACGATGTATCTAAGAAACAATACCATTGCGGCGGCTGTGGAATTTGCAGGTATGAATTAGTAGAACATTTTCCTTGTGCATGTTGTTGCCACTCAACTCTGCTGAAAAATAGTCACGCTTGTGTGGAGAAGGCAATGCATCATGATTGTCCTGTTTGTTTTGAGTATTTGTTCGAATCGATGCATGAAATCGCTGTCTTGCCATGTGGACATACAATCCATATCAACTGTCTGAATGAAATGAGACAGCATTTACAGTATGCATGCCCTCTTTGCTCAAAGTCAGTTTTTGATATGTCAAAGGTTTGGGAGAAGTTTGACTTGGAGATTGCTGCTACACCAATGCCTGAACTATATCAAAATAAAATGGTTTGGATCCTTTGCAATGATTGTGGCAGAACTAGTAACGTAAAGTACCATCTTATTGCTCAAAAGTGCTTGAATTGCAAATCCTACAACACACGACAAACTTGA 858 0.4044 MYSSEGEVYNLSSNAECMHGEELSQSKEHEKINDLRERGYMEHGCQHYRKRCRIRAPCCNEIFHCRHCHNEAKYDIRIVPKLRHDIPRHQVKHVICSLCGIEQEVQQNCINCGVCMGKYFCGICKLFDDDVSKKQYHCGGCGICRYELVEHFPCACCCHSTLLKNSHACVEKAMHHDCPVCFEYLFESMHEIAVLPCGHTIHINCLNEMRQHLQYACPLCSKSVFDMSKVWEKFDLEIAATPMPELYQNKMVWILCNDCGRTSNVKYHLIAQKCLNCKSYNTRQT 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g02973 285 SUPERFAMILY RING/U-box 177 227 - -
Aip08g02973 285 ProSiteProfiles Zinc finger CHY-type profile. 38 114 IPR008913 GO:0008270
Aip08g02973 285 Pfam Ring finger domain 177 220 IPR001841 -
Aip08g02973 285 Pfam Zinc-ribbon 225 283 IPR039512 -
Aip08g02973 285 ProSiteProfiles Zinc finger RING-type profile. 178 221 IPR001841 -
Aip08g02973 285 ProSiteProfiles Zinc finger CTCHY-type profile. 116 177 IPR017921 -
Aip08g02973 285 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 10 285 - -
Aip08g02973 285 SUPERFAMILY Zinc hairpin stack 117 171 IPR037275 -
Aip08g02973 285 SUPERFAMILY CHY zinc finger-like 42 116 IPR037274 GO:0008270
Aip08g02973 285 SMART ring_2 178 220 IPR001841 -
Aip08g02973 285 Gene3D - 249 285 - -
Aip08g02973 285 Pfam CHY zinc finger 45 126 IPR008913 GO:0008270
Aip08g02973 285 PANTHER CHY-TYPE/CTCHY-TYPE/RING-TYPE ZINC FINGER PROTEIN 10 285 - -
Aip08g02973 285 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 163 239 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g02973 Aip-Chr8 118326297 118386581 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g02973 43 283 C2H2 Transcription Factor Family AT3G18290 38.000 4.81e-46 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g02973 K10144 - gmx:100803569 488.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g02973 08 118326297 118386581 Aip08g02973 08 118326297 118386581 ECH
Aip06g03292 06 129258463 129263956 Aip08g02973 08 118326297 118386581 PCT