Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g02962 ATGTTGCCATTTGTAGCTAGAAGTAGTTCTAGGAGCGAAATAAACCACTTCGCCTCAGTTCCCAGCAGCCTCTTACCAGCATTTGGCACCAACTTTGATGAAGGGTATTTGAACCTTAGAAAATATGTAATAGCTCCGTATAACCGAAGATATCGGTTGTGGCAAACGTTCTTAGTTGCATTGGTGGTTTACTCTGCATGGGCATCTCCATTCGAGCTAGCCTTCAGAGAACTGTCAATTGGGTCGCTGGTGCCAGTTGATATCATTGTGGATGGCTTCTTTGCCATTGATATTATCCTTACTTTCTTTGTGGCTTATTTGGATAGATCAACTTATCTCCTCGTTGATGACCATAAGAAGATTGCTATAAGATATATTAAAATGTTACACTTCCCAATGGATCTAGCATCCACTCTCCCTTTCGACCAGATATACCAAATTCTGACAGGCAAACGACACGGGCCCGAGATCTTTGGTTTCCTAAATATGCTTAGACTATGGCGACTGAGACATGTTAGCGAATTCTTCTCAAGGCTAGAGAAAGACATACGAATTAGCTACACTGCAACAAGATTTTGTAAACTTATATGTGTTACGCTATTTGCAGTTCACTTCGCAGGCTGCATGTATTTTTGGTTGGCTTTCCATCACAAAACACCCGAAAATACATGGCTCCACAAGGAACTACCGGATTTTAAATATAGGAGTGTCTGGTTGTGTTACATCTATTCCATGTACTGGTCTATAACAACTCTTACCACTGTTGGCTATGGAGATCTGTATGCAGTGAATACAGAGGAGAAGGTTTACAGTAGTTTATTTATGCTGTTCAACATAGGCCTCACGGCATATATAATCGGAAACATGACTAATCTGGCAGTTCATAACACCGTCCGAACCTTTGCAATGAGGGATGCCTTTAACAGAGTGTTACGATATGCAAGCAAAAGTAGACTCCCAAAACGTTTGAAAGAACAAATGTTGGCGCATAAAGAATTGAAACTTAAGATGGAAGAGTCACAGCAACAAGAAGTGCTACAGGACATCCCTAAAGCAATTAGATCCAGTATTGCTCAACATCTTTTCAGCAATGTAGTTGATAAAGCATATTTATTTAAAGGAGTCTCTGATGAGTGTATCATTCAGCTGGCGTCAGACATGAAAGCAGAATACTACCTACCTAAGGTTGACATTATCTTGCAAAATGAGATGCCAATATATTTCTACATTCTGGTATATGGATCACTGCTCATAGAAAAATTTTTTTTCCAGCTTTTGTTTGAATTAGAACCTGGAGGCATGGCTGGAGAAATCGGCGGGATGTTTAATATTCCACAACCTTTTACAGTTAGAACTAGGAGGCTCTCCCAGGTCATACGAATCAACCAACATCAGTTCAAGCAGATGATGCAACCATTTAATAATGATGGGAAACAAATCATCAACAACTTCATTAAGTACTTGAGGGAACAAAGAGGCAGCGTGCTAGAAGAAATACCATACTTATCAGAATTACTAGGAGACCTGTATCTCGAGCATATAACACAAAATGGGGACTCACACGATGAAGTTTCAAGATATCACGATGATGGACCATGTAAAGAAGGAAGGACTATAAATTCCGATCCACGGTCAAGCCCAGCTTCCACTAGAGTAATAATCCATGGTCATCATCCCAATGAAAAGAAAATGGGAAAAGGAGACACGAAAAAGCTCATACTTCTCCCGAGCTCAATAGAAGAGCTTTTCAGAGTAGCAGAGAAAAAGTTCGGTAAAAGAGCGAGAAAAATTCTTATGGCGGATGGCTCAGAAGTAGAAGAAATAAACGTCTTAAGAGATCATGACGAGTTATACATCTTCTAA 1863 0.3994 MLPFVARSSSRSEINHFASVPSSLLPAFGTNFDEGYLNLRKYVIAPYNRRYRLWQTFLVALVVYSAWASPFELAFRELSIGSLVPVDIIVDGFFAIDIILTFFVAYLDRSTYLLVDDHKKIAIRYIKMLHFPMDLASTLPFDQIYQILTGKRHGPEIFGFLNMLRLWRLRHVSEFFSRLEKDIRISYTATRFCKLICVTLFAVHFAGCMYFWLAFHHKTPENTWLHKELPDFKYRSVWLCYIYSMYWSITTLTTVGYGDLYAVNTEEKVYSSLFMLFNIGLTAYIIGNMTNLAVHNTVRTFAMRDAFNRVLRYASKSRLPKRLKEQMLAHKELKLKMEESQQQEVLQDIPKAIRSSIAQHLFSNVVDKAYLFKGVSDECIIQLASDMKAEYYLPKVDIILQNEMPIYFYILVYGSLLIEKFFFQLLFELEPGGMAGEIGGMFNIPQPFTVRTRRLSQVIRINQHQFKQMMQPFNNDGKQIINNFIKYLREQRGSVLEEIPYLSELLGDLYLEHITQNGDSHDEVSRYHDDGPCKEGRTINSDPRSSPASTRVIIHGHHPNEKKMGKGDTKKLILLPSSIEELFRVAEKKFGKRARKILMADGSEVEEINVLRDHDELYIF 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g02962 620 SUPERFAMILY cAMP-binding domain-like 300 489 IPR018490 -
Aip08g02962 620 SUPERFAMILY Voltage-gated potassium channels 46 292 - -
Aip08g02962 620 Coils Coil 323 343 - -
Aip08g02962 620 Gene3D - 52 294 - -
Aip08g02962 620 Pfam KHA, dimerisation domain of potassium ion channel 551 619 IPR021789 -
Aip08g02962 620 Gene3D Jelly Rolls 337 493 IPR014710 -
Aip08g02962 620 PANTHER POTASSIUM CHANNEL KAT3 22 620 - -
Aip08g02962 620 CDD CAP_ED 371 481 IPR000595 -
Aip08g02962 620 SMART cnmp_10 371 485 IPR000595 -
Aip08g02962 620 PANTHER POTASSIUM CHANNEL AKT1 22 620 IPR045319 GO:0005249|GO:0006813
Aip08g02962 620 Pfam Ion transport protein 52 293 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Aip08g02962 620 PRINTS EAG/ELK/ERG potassium channel family signature 241 258 IPR003938 GO:0005249|GO:0006813|GO:0016020
Aip08g02962 620 PRINTS EAG/ELK/ERG potassium channel family signature 98 107 IPR003938 GO:0005249|GO:0006813|GO:0016020
Aip08g02962 620 PRINTS EAG/ELK/ERG potassium channel family signature 267 278 IPR003938 GO:0005249|GO:0006813|GO:0016020
Aip08g02962 620 PRINTS EAG/ELK/ERG potassium channel family signature 87 97 IPR003938 GO:0005249|GO:0006813|GO:0016020
Aip08g02962 620 PRINTS EAG/ELK/ERG potassium channel family signature 285 294 IPR003938 GO:0005249|GO:0006813|GO:0016020
Aip08g02962 620 ProSiteProfiles KHA domain profile. 551 620 IPR021789 -
Aip08g02962 620 ProSiteProfiles cAMP/cGMP binding motif profile. 371 487 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g02962 Aip-Chr8 118116081 118122262 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g02962 7 620 Ion Channels AT4G32650 53.537 0.0 638
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g02962 K21867 - gmx:100794620 846.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g02962 08 118116081 118122262 Aip08g02962 08 118116081 118122262 ECH