Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g02951 ATGAAGAGGTCTCCTAATTCCTCTTCTTCATCTTCATCATCTTCTATCGGTGCTGATTTTGAATTAAAGATTAATAATAATGATAAGTATCCAAGAAGCAAAAATAGCAGTAATAATGTGAAGTTATCACAGAATAAAGTATTGAAGAAAACAAATAGCTATGACAATAGCAGTGTCAACAAAAGAAGCTCCATTTACAGAGGAGTCACCAGGCATAGGTGGACAGGGAGGTTTGAAGCTCATCTGTGGGACAAGAATTCTTGGAATAATATCCAGAGTAAGAAGGGACGACAAGGGGCATATAATACAGAAGAAGCTGCTGCTCGCTCCTATGATCTTGCTGCTCTAAAAAGGAGCAGTGGATTTTCAAGAGGTGTTTCCAAGTATCGTGGAGTGGCTAGTAGGCATCACCACAATGGAAGGTGGGAAGCACGAATTGGAAGAGTAAATGGCAACAAGTACCTTTATCTGGGGACCTATAACACTCAAGAAGAGGCGGCAGCAGCATATGATAGAGCAGCTATAGAGTACAGAGGAATAAATGCAGTAACAAATTTTGATATAAGCAATTATATTGACAAAATAAAGAAGAATGAGCCGTCTATGAAAGAAGCACAAACACATATAACTCCAATCTCTACTGAATCTAAAGAAGCAGAAGTAGTAGTGGAGCAGGAGGCTCCTTCCACAGTAGTGGCAGATCCAGCAAATTCAGAAAATATGCAGAAGAAAAAAGAGCAGCCAAACACAAATATCGACGGCATACTTTCTCGGGATCTGAGATGGAGCTTCATGGATGCCGAATTATCCGAGTTCAACATGAATGATATTTTTCAAGGTGAAGGTAGTGGGTTGGAAGATGACATCAACCTTATcgccgccgcctctgcttgccacttctttgtgctgtccgccgctgccgcctgcaacttccAAGCTCCTTCTGTTGCTCTCTGCTCGTCTGTAAGTAGGAGAACAGTGAACAATGTACAACCATTTATGGAAGTAGCAAAGGCTCTTTCACACTCCAAAGCTGTCTCTTTTGGTTTCTTGATCGTGAGCAATAGCGTCTCTCTGAGACCTTTCAACAAGCATTTTCATGCTGATATACTTAATAATGACGGTCGATTTCACCGCAGACCTATACACATTGGTTCCCAATTGAATTGCTACTATGGAAAGCAATTCTCCTTGTTGAAACCAACAAGAAAAAGGGCTGATCTACTACCAACTCCTAGATGCTCAGTTGCTGGTAACTCCAGCACTGAACCTCATAAACCAATTGAAATGCACTTGAGAGGTTTCTCGGTCGAGTCAGTAAAAGCGGCTCTTTTGCAGCTGACTCCCATTGATATTGTGAAGTGGTCTGGGATATTATCCATCGTAGCTGCAGCCACAAAATGGACTGTGAATACACTCTTCAGTCCTTTCTTCTGGATGTATTTTAGTTGGTCATGGTTGTTTTGGCCGTGGTTTGTAGCTGTATTGATTGCATTTTATGGGTTACACTGCTTTGGGAAACATTTGCATGGCGAGGCAAACATGTTCGAGCAATTGGCGATTGTTACATCAGCTTTTACATGGCTCACTCTGGTTCCGCCAGGTTTCTTCAATGGCTACCTTGAAGGCTGGCCTTCCGTTTTCTTTTTTGTGTATCATTATTTCTTTTTCTTCAATGTTAGTGTTCGAAAGCGGTTATATGGAGACTATTTTACCCGGCCCCATGACCCTAAATGGGATGTGAACTTGCCGATGACGTCTCGCCTTGTGTTTAGTGCGGGAATCATGGTTGCCCATTGGCTTGCAGCATTTGAAGGGCCAGAGCTTCACCGGATACCAGAAAATGTGGTGGTGCCAACTGCTGTTGTTCAATTTGGACCGTATCGCTGGGCAGAAGGCAAAACTGGAGGAGGCTTTAATGGTTGA 1926 0.4081 MKRSPNSSSSSSSSSIGADFELKINNNDKYPRSKNSSNNVKLSQNKVLKKTNSYDNSSVNKRSSIYRGVTRHRWTGRFEAHLWDKNSWNNIQSKKGRQGAYNTEEAAARSYDLAALKRSSGFSRGVSKYRGVASRHHHNGRWEARIGRVNGNKYLYLGTYNTQEEAAAAYDRAAIEYRGINAVTNFDISNYIDKIKKNEPSMKEAQTHITPISTESKEAEVVVEQEAPSTVVADPANSENMQKKKEQPNTNIDGILSRDLRWSFMDAELSEFNMNDIFQGEGSGLEDDINLIAAASACHFFVLSAAAACNFQAPSVALCSSVSRRTVNNVQPFMEVAKALSHSKAVSFGFLIVSNSVSLRPFNKHFHADILNNDGRFHRRPIHIGSQLNCYYGKQFSLLKPTRKRADLLPTPRCSVAGNSSTEPHKPIEMHLRGFSVESVKAALLQLTPIDIVKWSGILSIVAAATKWTVNTLFSPFFWMYFSWSWLFWPWFVAVLIAFYGLHCFGKHLHGEANMFEQLAIVTSAFTWLTLVPPGFFNGYLEGWPSVFFFVYHYFFFFNVSVRKRLYGDYFTRPHDPKWDVNLPMTSRLVFSAGIMVAHWLAAFEGPELHRIPENVVVPTAVVQFGPYRWAEGKTGGGFNG 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g02951 641 PRINTS Ethylene responsive element binding protein signature 66 77 IPR001471 GO:0003700|GO:0006355
Aip08g02951 641 PRINTS Ethylene responsive element binding protein signature 169 189 IPR001471 GO:0003700|GO:0006355
Aip08g02951 641 PANTHER PROTEIN-S ISOPRENYLCYSTEINE O-METHYLTRANSFERASE 334 613 - -
Aip08g02951 641 CDD AP2 127 189 IPR001471 GO:0003700|GO:0006355
Aip08g02951 641 Pfam AP2 domain 127 179 IPR001471 GO:0003700|GO:0006355
Aip08g02951 641 Pfam AP2 domain 65 117 IPR001471 GO:0003700|GO:0006355
Aip08g02951 641 MobiDBLite consensus disorder prediction 231 250 - -
Aip08g02951 641 SUPERFAMILY DNA-binding domain 64 120 IPR016177 GO:0003677
Aip08g02951 641 ProSiteProfiles AP2/ERF domain profile. 128 187 IPR001471 GO:0003700|GO:0006355
Aip08g02951 641 MobiDBLite consensus disorder prediction 29 59 - -
Aip08g02951 641 SUPERFAMILY DNA-binding domain 127 189 IPR016177 GO:0003677
Aip08g02951 641 PANTHER PROTEIN C-TERMINAL S-ISOPRENYLCYSTEINE CARBOXYL O-METHYLTRANSFERASE 334 613 - -
Aip08g02951 641 MobiDBLite consensus disorder prediction 1 21 - -
Aip08g02951 641 CDD AP2 64 117 IPR001471 GO:0003700|GO:0006355
Aip08g02951 641 MobiDBLite consensus disorder prediction 1 59 - -
Aip08g02951 641 ProSiteProfiles AP2/ERF domain profile. 65 130 IPR001471 GO:0003700|GO:0006355
Aip08g02951 641 SMART rav1_2 128 193 IPR001471 GO:0003700|GO:0006355
Aip08g02951 641 SMART rav1_2 65 121 IPR001471 GO:0003700|GO:0006355
Aip08g02951 641 Gene3D AP2/ERF domain 65 122 IPR036955 GO:0003700|GO:0006355
Aip08g02951 641 Gene3D AP2/ERF domain 127 189 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g02951 Aip-Chr8 117904137 117914669 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g02951 117 197 AP2-EREBP Transcription Factor Family AT5G57390 39.326 9.43e-10 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Aip08g02951 AP2 2.9e-11 CL0081