Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g02936 ATGGGCGGAATCAGCCTTGAGGAGATCAAGAACGAGAACGTCGATCTGGAACATATTCCAGTAGACGAAGTGTTTGAGCAGCTGAAATGTTCCAGAGAAGGTTTATCACAGGACGAAGGAGCCAGCAGGCTTCAAGTCTTTGGACCAAACAAATTGGAAGAGAAAAAGGAAAGCAAGTTTCTTAAGTTCTTGGGTTTTATGTGGAATCCATTATCATGGGTCATGGAAGCTGCTGCCATTATGGCCATTGCTCTTGCAAATGGTGGTGGAAGGCCACCGGATTGGCAGGATTTTGTTGGTATCATTGCTCTCTTGTTCATTAACTCTACAATCAGTTTCATTGAGGAAAACAATGCTGGGAATGCAGCTGCTGCACTCATGGCTGGTTTAGCCCCCAAAACCAAGGTTCTGAGAGATGGCAGATGGACTGAACAAGATGCCGCTATTTTGGTCCCAGGAGACATAATCAGCATCAAATTGGGAGATATCATCCCGGCCGATGCGCGTCTTCTGGAGGGTGATGCTCTGAGTGTTGATCAGTCTGCTTTAACCGGAGAATCTCTTCCGGTGACAAAGAATCCTCATGATGAAGTGTTTTCCGGGTCAACTGTTAAGAAGGGTGAGATTGAAGCAGTTGTGATTGCCACTGGTGTCCACACCTTCTTTGGTAAAGCAGCTCATCTTGTTGACAGCACCAATCAAGTTGGTCACTTCCAGAAAGTTCTTACAGCCATTGGTAACTTCTGCATTTGCTCAATTGCTGTTGGGATAGCCATTGAGCTCATAGTCATGTATCCAATTCAGCACAGAAAGTACAGGGATGGGATTGACAACCTGTTGGTTCTCTTGATTGGAGGGATCCCTATTGCCATGCCAACTGTGTTGTCTGTCACTATGGCTATTGGTTCTCACAGGCTTTCCCAGCAAGGTGCAATCACAAAGAGAATGACAGCTATCGAGGAAATGGCGGGTATGGATGTTCTCTGCAGTGACAAAACCGGGACTCTGACACTGAACAAGCTGACTGTTGATAAAAACCTGATTGAGGTTTTTGCAAAGGGTGTTGAGAAGGATCATGTTATCCTTCTTGCTGCAAGGGCTTCTAGGACTGAGAATCAAGATGCTATAGATGCCGCAATTGTTGGTATGCTTGCTGATCCAAAGGAGGCAAGAGCTGGAATCCGAGAGGTCCATTTTTTCCCTTTCAATCCTGTAGACAAGAGAACTGCTCTAACTTACATTGATTCTGATGGAAATTGGCATAGATCCAGCAAAGGTGCTCCTGAGCAGATATTGAACCTCTGCAACTGCAAAGAGGATGTGAGGAGAAAGGCTCATGCAACTATTGATAAGTTTGCCGAGCGTGGGCTCCGATCTTTGGGGGTTGCTAGACAGGAAGTACCTGAGAAATCAAAAGATGCTCCTGGTGCACCATGGCAATTTGTTGCGCTGCTACCACTGTTTGATCCTCCCAGGCATGATAGCGCTGAAACCATCACAAGAGCCCTGAACCTTGGTGTTAATGTAAAAATGATTACTGGTGATCAGCTTGCTATTGCCAAGGAAACTGGAAGAAGGCTTGGCATGGGAACAAACATGTACCCTTCATCCTCATTGCTTGGTCAAAGCAAGGATGCTGCAGTTTCAGCTCTTCCAGTTGATGAGTTGATTGAGAAAGCTGATGGATTTGCTGGAGTGTTTCCCGAACACAAATATGAAATTGTTAAGAGGCTGCAAGACAGGAAGCATATATGTGGAATGACAGGTGATGGTGTCAACGACGCCCCTGCATTAAAGAGAGCAGATATTGGAATTGCTGTTGCTGATGCTACAGATGCTGCTAGAAGTGCTTCTGATATTGTCCTCACTGAACCTGGTCTTAGTGTCATTATTAGTGCAGTCCTCACCAGCAGGGCAATTTTCCAAAGGATGAAGAACTATACCGTTATTCATATAATTTTATTTAATCTACTTTTTATTTTGCAGTTTGGTTTCATGTTTATTGCATTGATTTGGAAGTTTGATTTTGCACCCTTTATGGTATTGATCATTGCCATACTTAATGATGGTACCATTATGACTATATCCAAGGATAGAGTGAAACCATCCCCACAACCTGATAGCTGGAAACTGAAGGAGATATTTGCTACTGGTGTTGTGCTTGGAAGTTACCTGGCACTAATGACAGTAGTATTTTTCTGGCTTATGAAGGACACTGACTTTTTCTCGGACAAGTTTGGTGTAAGGTCTCTGAGACACAGCCCTGCAGAAATGATGGCAGCCCTTTACCTACAAGTCAGTATTATTAGCCAGGCACTGATTTTTGTCACTAGGTCGCGCAGCTGGTCCTATGTTGAAAGACCTGGTCTTCTTCTACTGGGTGCTTTCATGATTGCTCAGCTGGTGGCAACTGCTCTTGCAGTATATGCTAACTGGAGCTTTGCAAGAATCAAGGGAATGGGATGGGGTTGGGCTGGTGTAATCTGGCTCTACAGTTTAGTGACTTATGTGCCTCTTGATTTGCTTAAATTCGCAATCCGCTATGCTCTTAGTGGCAAGGCCTGGGATAATCTTTTGGAAAACAAGACTGCATTCACCACAAAGAAAGACTATGGCAAAGAAGAGAGAGAGGCACAATGGGCTGCTGCACAGAGAACTCTTCATGGTCTTCAGCCACCAGAAACAACCAATCTTTTCAATGACAAGAATAGCTACAGGGAACTTTCAGAGATTGCTGAGCAAGCAAAAAGACGTGCTGAGGTTGCAAGGCTGAGGGAGCTTCACACTCTAAAGGGTCATGTTGAGTCAGTTGTGAAGCTGAAGGGACTTGACATTGACACAATCCAGCAGCATTACACTGTTTGA 2865 0.4464 MGGISLEEIKNENVDLEHIPVDEVFEQLKCSREGLSQDEGASRLQVFGPNKLEEKKESKFLKFLGFMWNPLSWVMEAAAIMAIALANGGGRPPDWQDFVGIIALLFINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGRWTEQDAAILVPGDIISIKLGDIIPADARLLEGDALSVDQSALTGESLPVTKNPHDEVFSGSTVKKGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGIAIELIVMYPIQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLIEVFAKGVEKDHVILLAARASRTENQDAIDAAIVGMLADPKEARAGIREVHFFPFNPVDKRTALTYIDSDGNWHRSSKGAPEQILNLCNCKEDVRRKAHATIDKFAERGLRSLGVARQEVPEKSKDAPGAPWQFVALLPLFDPPRHDSAETITRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSSLLGQSKDAAVSALPVDELIEKADGFAGVFPEHKYEIVKRLQDRKHICGMTGDGVNDAPALKRADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTVIHIILFNLLFILQFGFMFIALIWKFDFAPFMVLIIAILNDGTIMTISKDRVKPSPQPDSWKLKEIFATGVVLGSYLALMTVVFFWLMKDTDFFSDKFGVRSLRHSPAEMMAALYLQVSIISQALIFVTRSRSWSYVERPGLLLLGAFMIAQLVATALAVYANWSFARIKGMGWGWAGVIWLYSLVTYVPLDLLKFAIRYALSGKAWDNLLENKTAFTTKKDYGKEEREAQWAAAQRTLHGLQPPETTNLFNDKNSYRELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIDTIQQHYTV 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g02936 954 Pfam Cation transporter/ATPase, N-terminus 18 81 IPR004014 -
Aip08g02936 954 Gene3D - 132 216 - -
Aip08g02936 954 PRINTS H+-transporting ATPase (proton pump) signature 619 644 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Aip08g02936 954 PRINTS H+-transporting ATPase (proton pump) signature 588 604 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Aip08g02936 954 PRINTS H+-transporting ATPase (proton pump) signature 560 576 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Aip08g02936 954 PRINTS H+-transporting ATPase (proton pump) signature 763 784 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Aip08g02936 954 PRINTS H+-transporting ATPase (proton pump) signature 445 463 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Aip08g02936 954 Gene3D - 326 625 IPR023214 -
Aip08g02936 954 Gene3D - 341 488 IPR023299 GO:0000166
Aip08g02936 954 Gene3D - 94 818 - -
Aip08g02936 954 PANTHER PLASMA MEMBRANE ATPASE 1 934 - -
Aip08g02936 954 SFLD p-type atpase 311 639 IPR044492 -
Aip08g02936 954 SUPERFAMILY Calcium ATPase, transduction domain A 132 229 IPR008250 -
Aip08g02936 954 ProSitePatterns E1-E2 ATPases phosphorylation site. 331 337 IPR018303 -
Aip08g02936 954 SMART Cation_ATPase_N_a_2 15 87 IPR004014 -
Aip08g02936 954 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 34 809 IPR006534 GO:0008553|GO:0016021|GO:0120029
Aip08g02936 954 Gene3D - 903 954 - -
Aip08g02936 954 Pfam haloacid dehalogenase-like hydrolase 325 602 - -
Aip08g02936 954 SUPERFAMILY HAD-like 325 635 IPR036412 -
Aip08g02936 954 Pfam E1-E2 ATPase 131 308 - -
Aip08g02936 954 SFLD Haloacid Dehalogenase 311 639 - -
Aip08g02936 954 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 101 349 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Aip08g02936 954 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 563 672 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Aip08g02936 954 Coils Coil 905 925 - -
Aip08g02936 954 CDD P-type_ATPase_H 34 844 IPR006534 GO:0008553|GO:0016021|GO:0120029
Aip08g02936 954 PANTHER CALCIUM-TRANSPORTING ATPASE 1 934 - -
Aip08g02936 954 SUPERFAMILY Calcium ATPase, transmembrane domain M 14 850 IPR023298 -
Aip08g02936 954 PRINTS P-type cation-transporting ATPase superfamily signature 483 494 - -
Aip08g02936 954 PRINTS P-type cation-transporting ATPase superfamily signature 329 343 - -
Aip08g02936 954 PRINTS P-type cation-transporting ATPase superfamily signature 505 515 - -
Aip08g02936 954 PRINTS P-type cation-transporting ATPase superfamily signature 611 623 - -
Aip08g02936 954 PRINTS P-type cation-transporting ATPase superfamily signature 179 193 - -
Aip08g02936 954 PRINTS P-type cation-transporting ATPase superfamily signature 588 607 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g02936 Aip-Chr8 117722271 117728654 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g02936 4 954 Primary Pumps ATPases AT2G07560 82.229 0.0 1595
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g02936 K01535 - gmx:547525 1729.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g02936 08 117722271 117728654 Aip08g02936 08 117722271 117728654 ECH
Aip06g03258 06 128891489 128899312 Aip08g02936 08 117722271 117728654 PCT