Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g02907 ATGCAACATAGGCTGAAGTTGCAGCAACAACAACAACAAGCCCTAATGCAACAAGCCTTGCTTCAACAACAGCAGATGTACCACCCTGGCATGCTTGCTGCTGCAATGTCTCAGCAGATGGAGCCAGTTCCAGGTGGAAATCTACCCCCTGGGTTTGACACTTCTTCATGCCGTAGTGTTTATGTAGGAAATATTCATGTAAATGTCACGGATAAACTTCTTGCAGAAGTTTTTCAGAGTGCTGGTCCTCTGGCTGGGTGCAAGCTCATAAGAAAAGAAAAGTCCTCTTATGGTTTTGTGGACTATCATGATCGAGCATCTGCAGCCCTTGCAATAATGACATTGCATGGAAGGCAACTATATGGTCAAGCACTTAAGGTGAATTGGGCATATGCCAATAGCAGTAGAGAGGATACTTCAGGGCACTACAATATATTTGTTGGTGATTTGAGTCCAGAGGTTACTGATGCGACTTTATTTGCATGCTTCTCAGTCTATCCTAGTTGTTCGGATGCAAGGGTTATGTGGGATCACAAAACTGGGCGCTCAAAAGGATATGGTTTTGTTTCTTTCCGTGATCATCAGGATGCACAAAGTGCTATAAATGATATGACAGGTAAATGGCTGGGAAATAGGCAGATACGATGCAATTGGGCAACTAAGGGTGCCAGTACTAGCTCCAATGAAGAGAAGAGCACTGACAACCAAAATGCTGTTGTTCTTACAAATGGGTCTTCAGATGGAGGTCAAGATAACAGCAATGAGGATGCCCCTGAAAACAATCCTGCATACACCACTGTTTATGTTGGCAACCTTCCCCATGATGTAACACAAGCTGAACTCCACTGTCAATTTCATGCACTGGGGGCTGGAGTTATTGAGGAGGTTCGAGTTCAGAGGGATAAAGGTTTTGGATTTGTCAGATACAACACTCATGAGGAAGCAGCATTGGCCATTCAGATGGCTAATGGAAGAATAGTTCGTGGGAAGTCTATGAAGTGTTCATGGGGCAGCAAGCCAACTCCTCCTGGAACAGCTTCAAATCCTCTGCCTCCTCCTGCTCAACCATATCAAATACTTCCTACTGCAGGGATGAACCAAGGCTATTCTCCTGCTGAGTTGTTGGCGTATCAGCGCCAGCTGGCCTTGAGTCAAGCTGCTGTATCCGGCCTTTCAGGTCAAGCTCTTCTGCAGATGTCTGGACAACATGGCCTAGCTCCTGCATCAATGGGTATAAACTCCGGGGGATCCCAAGCCATGTATGACGGATATGCTGGTAATTCATCAAGACAGCAGCTCATGTACTATCGCTAA 1314 0.4574 MQHRLKLQQQQQQALMQQALLQQQQMYHPGMLAAAMSQQMEPVPGGNLPPGFDTSSCRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSSYGFVDYHDRASAALAIMTLHGRQLYGQALKVNWAYANSSREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGASTSSNEEKSTDNQNAVVLTNGSSDGGQDNSNEDAPENNPAYTTVYVGNLPHDVTQAELHCQFHALGAGVIEEVRVQRDKGFGFVRYNTHEEAALAIQMANGRIVRGKSMKCSWGSKPTPPGTASNPLPPPAQPYQILPTAGMNQGYSPAELLAYQRQLALSQAAVSGLSGQALLQMSGQHGLAPASMGINSGGSQAMYDGYAGNSSRQQLMYYR 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g02907 437 CDD RRM3_TIA1_like 265 339 - -
Aip08g02907 437 Gene3D - 243 343 IPR012677 -
Aip08g02907 437 PANTHER OLIGOURIDYLATE-BINDING PROTEIN 1B-LIKE ISOFORM X1 10 434 - -
Aip08g02907 437 SUPERFAMILY RNA-binding domain, RBD 138 248 IPR035979 GO:0003676
Aip08g02907 437 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 10 434 - -
Aip08g02907 437 MobiDBLite consensus disorder prediction 221 263 - -
Aip08g02907 437 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 265 339 IPR000504 GO:0003723
Aip08g02907 437 Gene3D - 2 140 IPR012677 -
Aip08g02907 437 Gene3D - 141 240 IPR012677 -
Aip08g02907 437 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 143 221 IPR000504 GO:0003723
Aip08g02907 437 SUPERFAMILY RNA-binding domain, RBD 255 348 IPR035979 GO:0003676
Aip08g02907 437 SMART rrm1_1 266 335 IPR000504 GO:0003723
Aip08g02907 437 SMART rrm1_1 144 217 IPR000504 GO:0003723
Aip08g02907 437 SMART rrm1_1 59 128 IPR000504 GO:0003723
Aip08g02907 437 SUPERFAMILY RNA-binding domain, RBD 43 136 IPR035979 GO:0003676
Aip08g02907 437 CDD RRM2_PUB1 144 218 - -
Aip08g02907 437 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 60 126 IPR000504 GO:0003723
Aip08g02907 437 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 145 215 IPR000504 GO:0003723
Aip08g02907 437 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 267 332 IPR000504 GO:0003723
Aip08g02907 437 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 58 132 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g02907 Aip-Chr8 117143319 117150455 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g02907 59 339 Eukaryotic Initiation Factors Gene Family AT2G23350 29.795 1.74e-26 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g02907 K13201 - gmx:100777108 824.698