Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g02898 ATGTCTCAAGGCTATTACTCAGAGTCATACCCTTCTTCTTCTTCTTCTTCTTCTGATTCTGGATCTGATATTTCAGATGCTGCTGCTGCTTCAGCTGAACTGAAGCTCTATCGAGCATTCATTTTCTCGGCACCAATATTCTTCACTTTCATTCTTCTCTTCCTCTTTTATGTCTTCTATCTTCGACCCAGAAGGGTTGATTGGTCCTCCCTTAGGATGAGACCCTTTGCTTTTGCTCATGACTCCAACACCAGCACCATCTCCACGTGGGATATTGGGTTGAAGAAAGAATTGAGAGAGATGCTGCCTATTATTGTGTACAAGGAAAGCTTCTCTGTCAAAGATACCCAATGCTCAGTGTGCCTTTTGGACTACCAAGCAGAGGATAAGCTTCAACAGATACCTGCATGTGGCCATACATTTCACATGAGCTGCATTGATCTTTGGCTGTCCAGCCACAGCACCTGCCCTCTCTGCCGCTTGTCCCTATTAACATCGGCTAAATCTTCAACAGAGCCATCTCACAGACAGGTTGATGGGCCACAGAGCAATGAGGAAACACAGACCATAGAATCATCAGAGTTGAGAGCTACTAGTCATGTAGAAACCACTGTTTCCCAGAATGTCTCAGGAGAGGTTGCAATTGCCGCTCACTGCATCGATGTTGAAGGACAACATGGACAAAACAATCAGTAG 696 0.4511 MSQGYYSESYPSSSSSSSDSGSDISDAAAASAELKLYRAFIFSAPIFFTFILLFLFYVFYLRPRRVDWSSLRMRPFAFAHDSNTSTISTWDIGLKKELREMLPIIVYKESFSVKDTQCSVCLLDYQAEDKLQQIPACGHTFHMSCIDLWLSSHSTCPLCRLSLLTSAKSSTEPSHRQVDGPQSNEETQTIESSELRATSHVETTVSQNVSGEVAIAAHCIDVEGQHGQNNQ 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g02898 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 165 IPR013083 -
Aip08g02898 231 ProSiteProfiles Zinc finger RING-type profile. 118 160 IPR001841 -
Aip08g02898 231 CDD RING-H2_EL5_like 117 160 - -
Aip08g02898 231 MobiDBLite consensus disorder prediction 1 21 - -
Aip08g02898 231 SMART ring_2 118 159 IPR001841 -
Aip08g02898 231 PANTHER RING-H2 FINGER PROTEIN ATL7-LIKE 6 191 - -
Aip08g02898 231 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 6 191 - -
Aip08g02898 231 MobiDBLite consensus disorder prediction 170 199 - -
Aip08g02898 231 SUPERFAMILY RING/U-box 102 166 - -
Aip08g02898 231 Pfam Ring finger domain 117 160 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g02898 Aip-Chr8 116979446 116982301 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g02898 28 193 C3H Transcription Factor Family AT4G10150 59.763 4.44e-66 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g02898 K19039 - gmx:100794211 259.225