Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g02897 ATGGAAAGAGGGTTTGATAGAAGGTACATAAAGAAAGGACCATGGAGCAGAGAGGAAGATGAGGTGCTCCAGGAGCATGTTAACAAGTATGGTGCAAGGGATTGGAGCTCCATTCGATCCAAAGGCTTGTTGCCTCGAACTGGAAAATCTTGTCGCCTTCGATGGGTTAACAAGCTTAGACCAAACTTGAAGATAGGGTGCAAGTTTACGGAAGAAGAGGAGAAGTTGGTAATAGAGTTACAAGGGCAATTTGGGAACAAATGGGCAAAAATTGCTACATATTTGGAAGGAAGAACAGACAACGATGTAAAGAATTTCTGGAGCAGTAGAAGAAAGAGGATAGAGAGGATGTTGCGGAAGCCATCAATAACTTCGTCAAAGATGCAAAACAAAAACAAAGGAAAAGTCCCTCTTAGTCAAGTACAATTTGAAGAGGATATTTCATGCAGCTCCAATAAGCCAGAGGAAAATATCCCCTGTGGAAACTACCTTCCTTATTACACTGCTCCCTACATGGGAAACACTGAAGAGTTCAAAATGGTCAACCTACCAGATTTGACAAAACCAAACCACCAAAATTTGGAAAGTGACATCAACACTTCTTCTCAGGCTTTTGAGGCCACCCCACTCCATGTGGTACCTTCTTTTGAGTCTTCAACAACAGAGTACACATTTCCTCAAATCCCAAATGAACCACAACTGGAATTTCCAGTGTTTCCAGAACCAATTGATGACCCTTACTTCTTTGATATGCTTGAGCAAAAAAGTGTTCAGAACAAGATTGGAACAACTGTTGGAATGGATGGAAAGCCTCAAAATGAAAGTGCTAAGTGCTTCTTTGAGGACATCCCAACTGAGATCTTTGAATACTTTGACCATACTCCAACTTCATCAGACCAATAA 903 0.412 MERGFDRRYIKKGPWSREEDEVLQEHVNKYGARDWSSIRSKGLLPRTGKSCRLRWVNKLRPNLKIGCKFTEEEEKLVIELQGQFGNKWAKIATYLEGRTDNDVKNFWSSRRKRIERMLRKPSITSSKMQNKNKGKVPLSQVQFEEDISCSSNKPEENIPCGNYLPYYTAPYMGNTEEFKMVNLPDLTKPNHQNLESDINTSSQAFEATPLHVVPSFESSTTEYTFPQIPNEPQLEFPVFPEPIDDPYFFDMLEQKSVQNKIGTTVGMDGKPQNESAKCFFEDIPTEIFEYFDHTPTSSDQ 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g02897 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 60 115 IPR017930 -
Aip08g02897 300 ProSiteProfiles Myb-like domain profile. 68 111 IPR001005 -
Aip08g02897 300 Gene3D - 68 138 - -
Aip08g02897 300 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Aip08g02897 300 PANTHER TRANSCRIPTION FACTOR DUO1 1 300 - -
Aip08g02897 300 SMART sant 65 113 IPR001005 -
Aip08g02897 300 SMART sant 11 61 IPR001005 -
Aip08g02897 300 Gene3D - 11 64 - -
Aip08g02897 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 55 IPR017930 -
Aip08g02897 300 CDD SANT 68 107 IPR001005 -
Aip08g02897 300 PANTHER MYB TRANSCRIPTION FACTOR 1 300 - -
Aip08g02897 300 CDD SANT 14 59 IPR001005 -
Aip08g02897 300 Pfam Myb-like DNA-binding domain 68 108 IPR001005 -
Aip08g02897 300 Pfam Myb-like DNA-binding domain 12 57 IPR001005 -
Aip08g02897 300 ProSiteProfiles Myb-like domain profile. 7 59 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g02897 Aip-Chr8 116967496 116969443 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g02897 10 296 MYB Transcription Factor Family AT3G60460 42.006 3.58e-63 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip08g02897 Myb_DNA-binding 3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g02897 K09422 - gmx:100793689 351.288