Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g02853 ATGGTCCTTCCACATCCACCTACTTTAAGGACCCTCTCTCTTAATGGTAAAGGTTCATTCTCTCCATTGTCAAAGGTTGCCCACTCATTACCGGTTACTCCAATCGCATCTTTGGGTCAAGAAAGTGTACATGGCAAACATCTGGGATGTGCTTCTGATTTAAATACAATGGTTGTCAAGCAGCATATAACTCGATCACTTTCGGTTCCAGTTGATGCCAAAGCCAGCAAATTAAGGTGCACTCAGTCTAGGGTCTTGATTCGTATCATTTCAGCCAGGCGGCATCTTGCAACTGTTGATGGAACTTCAACTGGTGATTCTTCAGTCATGGAGATTACTATTGAGGATACTACAGCAGATATTCCAGAGGAAGAAGCAGTTTGTAGGATTTGTTTGGCAGAGCTCGGGGAAGGAGAAAATACTCTTAAGATGGAATGCAATTGTAAAGGTGATCTTGCACTTGCTCATCAAGACTGTGCAGCAAAGTGGTTTAGTATTAAGGGCAACAGGACTTGCGATGTCTGCAAGCAGGATGTTCAAAACCTCCCGGTAACACTATTGAAAATTTATGATCGCAAACTCCCTGCCAGACAGCCACCAAATGTGCCACAACCAAGGGAAATAGCTTATTACCAAATGGTTCCTGAAGgagagaagaagagatactag 669 0.4215 MVLPHPPTLRTLSLNGKGSFSPLSKVAHSLPVTPIASLGQESVHGKHLGCASDLNTMVVKQHITRSLSVPVDAKASKLRCTQSRVLIRIISARRHLATVDGTSTGDSSVMEITIEDTTADIPEEEAVCRICLAELGEGENTLKMECNCKGDLALAHQDCAAKWFSIKGNRTCDVCKQDVQNLPVTLLKIYDRKLPARQPPNVPQPREIAYYQMVPEGEKKRY 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g02853 222 ProSiteProfiles Zinc finger RING-CH-type profile. 120 182 IPR011016 GO:0008270
Aip08g02853 222 PANTHER OS02G0165000 PROTEIN 7 212 - -
Aip08g02853 222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 183 IPR013083 -
Aip08g02853 222 SUPERFAMILY RING/U-box 124 179 - -
Aip08g02853 222 PANTHER OS02G0165000 PROTEIN 7 212 - -
Aip08g02853 222 Pfam RING-variant domain 128 175 IPR011016 GO:0008270
Aip08g02853 222 CDD RING_CH-C4HC3_MARCH 128 176 - -
Aip08g02853 222 SMART ringv_2 127 176 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g02853 Aip-Chr8 116430618 116431900 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g02853 111 182 C3H Transcription Factor Family AT2G37950 43.836 1.41e-12 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g02853 - - aip:110265370 451.055