Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g02838 tcattctatGTGTATAGTCATGCTCTAAAATACTCTCAAGAAATGGATTCAAACAACACTAATTCTGGATTATTAAGGTACCGGTCTGCTCCAAGCTCAATGCTCACAAGCCTTATGGATAACATCCACCACGGCGGCGGCGGCGGTGGCGGCGGCGGCGGCGGTGGCGGCGACGAAGAAGCCTTGAGAACTGAATTGGAAAAGTTGATCTCATCCAACAACAAAAACAAACGTGTTGTGAACAATTCTTCAGAGCATTTGAAGAGAGAAGAAGGCAACAACAATTGTAATTACTCTTTTGGGTCTCAGAATCATGTTATTTACCAAAACAACCAGCACTACCATCAAATTCATCAAGGGTTGGCAATGGCATCATCATGTAATAATGGTTTTGATGGAACATTATTTGGTGCAACGAACTCAATGGATTCAGAGAATAATAATGATAATGGCACACAAAATAAAATGGGTTCCAATCTCGTTAGGCAAAAGAGTTCTCCAGCTGGTTTTTTCTCCAATTATTCAATTGATAATAATGGTAAGTATTATATTATATGCTTTTCTCTTGTCTTGTTTAATATAATTTCACTTTTATTAGCTAGTGGATTGCAATGCACTTTGAACTTCTCATCAAGATCATCCTCTTGCTCCAAAAGCCGCATGCCAAAAATTGTTGAGAGTGGAAATGAAGGCATGGAATCAAATTGTGTTGAAAATAGAAACCTAATAATAAGGAATGATGATAGTAATAATAATAATAATAATGGCAGTACTAAGTGTTATATGCCAAGATTCACTGGTGACTTTTGGGATGCTTCTGAATTCAATTCCTCCAAAAGAGGCACTAACAATGGTGAAATCATGTTTTCCACTTCAAATGCCATGGAAGCTCAGGATGTAGATTTTGGATATCAAAAGGTTGGTTTGACCCACCATTTAAGTCTACCTAGTTCTTCTACCAAGATTGGTGGCATGGAAAAGCTTTTTCAAATTCAAGGATCTGCTCCATGTAAGATTAGAGCCAAAAGAGGATTTGCCACTCACCCAAGAAGCATTGCAGAGAGGGAAAGAAGAACAAGAATAAGTGCCAGAATCAAGAAACTCCAAGACCTTTTCCCAAAATCGGACAAGCAAACAAGTACTGCAGATATGTTGGATTTGGCAGTTGATTATATCAAAGGCCTTCAGAAACAAGTCAAGATACTCACAGATACAAGGGCAAAGTGCAACTGTTCAAGTAATAATCAGAAAGAACAATAA 1260 0.3794 SFYVYSHALKYSQEMDSNNTNSGLLRYRSAPSSMLTSLMDNIHHGGGGGGGGGGGGGDEEALRTELEKLISSNNKNKRVVNNSSEHLKREEGNNNCNYSFGSQNHVIYQNNQHYHQIHQGLAMASSCNNGFDGTLFGATNSMDSENNNDNGTQNKMGSNLVRQKSSPAGFFSNYSIDNNGKYYIICFSLVLFNIISLLLASGLQCTLNFSSRSSSCSKSRMPKIVESGNEGMESNCVENRNLIIRNDDSNNNNNNGSTKCYMPRFTGDFWDASEFNSSKRGTNNGEIMFSTSNAMEAQDVDFGYQKVGLTHHLSLPSSSTKIGGMEKLFQIQGSAPCKIRAKRGFATHPRSIAERERRTRISARIKKLQDLFPKSDKQTSTADMLDLAVDYIKGLQKQVKILTDTRAKCNCSSNNQKEQ 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g02838 419 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 16 415 - -
Aip08g02838 419 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 16 415 - -
Aip08g02838 419 Gene3D - 347 418 IPR036638 GO:0046983
Aip08g02838 419 Pfam Helix-loop-helix DNA-binding domain 351 396 IPR011598 GO:0046983
Aip08g02838 419 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 348 410 IPR036638 GO:0046983
Aip08g02838 419 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 345 395 IPR011598 GO:0046983
Aip08g02838 419 SMART finulus 351 401 IPR011598 GO:0046983
Aip08g02838 419 MobiDBLite consensus disorder prediction 40 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g02838 Aip-Chr8 116163084 116166160 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g02838 159 413 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 39.844 7.01e-40 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip08g02838 HLH 3.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g02838 - - gmx:100795896 380.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g02838 08 116163084 116166160 Aip08g02838 08 116163084 116166160 ECH