Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g02821 ATGACAGATCCTCAATCCAATTCCTTAGAAGATGATGGATTCTTCAACTTCATGCCTCTCCACCCTCCTCACCACTGTTCTTCATCTTCTTCTCAATCCAATTTGCACCCATTTGCATACTTAAACACAAGATTTGTTAGAACAACAACAACAACAACACATCATCAACAACAACAACAATCTGAAGCTTCTTCATCTTCCTCCGAATATCTTCTTCCTTCAAATTCTAATTCCCCTTCTCTTAAAGAAGCACTTCCTCTCATAAACAAACTAAGCCTCACAAATCACCAACAAAACAACCACAAGGGTGCACTCACATATCCAGATTCTATTAATTACGAGAACGAAGACGAAGACGAAGAAGCGGATAATGAAACTGTGGCTGTTGCACTGCGCATAGGGCTTCCAAGAATGGATACTTCTTATGATCTTCAACCTTCAAGAAAGGAAGAAGTTATGGCTGATGAGAAACAGCAACAAGAACAAGTCAATAATAATGTGTTTTCTGGAAACCCTTTTGAGAGATTCAACAATAACAACAATAACAAGGGTCACTATTGGATTCCCACACCTTCTCAGATTCTAATTGGACCTACACAGTTCTCATGCCCTCTTTGCTCCAAAACCTTCAACAGATACAACAATCTTCAGATGCATATGTGGGGACATGGATCACAATACAGAAAGGGACCTGATTCTCTAAAAGGAACACAACCAACAGCAATGCTAAGGCTTCCATGTTTTTGTTGTGAACAAGGTTGCAAGCACAACATTGAGCACCCAAGGGCAAGGCCCTTGAAGGATTTTAGAACCCTCCAAACACATTACAAGAGGAAGCATGGCATCAAACCCTACATGTGCCGGAAGTGCCGGAAGCCCTTCGCCGTCAAAGGCGACTGGCGGACGCATGAGAAGAACTGCGGCAAGGTTTGGTATTGTTTGTGTGGATCTGACTTCAAGCACAAGAGGTCACTTAAGGATCATATTAGAGCCTTTGGAGATGGACATGGAGCCTTTGGGATTCAGAGCTTGCAAGAATTTGAAGATGAAGCTCCCTCAGAAGCTGAACATGATGGGGAGAGTAGTTCTTTCTGA 1095 0.4237 MTDPQSNSLEDDGFFNFMPLHPPHHCSSSSSQSNLHPFAYLNTRFVRTTTTTTHHQQQQQSEASSSSSEYLLPSNSNSPSLKEALPLINKLSLTNHQQNNHKGALTYPDSINYENEDEDEEADNETVAVALRIGLPRMDTSYDLQPSRKEEVMADEKQQQEQVNNNVFSGNPFERFNNNNNNKGHYWIPTPSQILIGPTQFSCPLCSKTFNRYNNLQMHMWGHGSQYRKGPDSLKGTQPTAMLRLPCFCCEQGCKHNIEHPRARPLKDFRTLQTHYKRKHGIKPYMCRKCRKPFAVKGDWRTHEKNCGKVWYCLCGSDFKHKRSLKDHIRAFGDGHGAFGIQSLQEFEDEAPSEAEHDGESSSF 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g02821 364 SMART c2h2final6 285 305 IPR013087 -
Aip08g02821 364 SMART c2h2final6 201 223 IPR013087 -
Aip08g02821 364 SMART c2h2final6 248 280 IPR013087 -
Aip08g02821 364 PANTHER ZINC FINGER PROTEIN WIP2 1 358 IPR043584 GO:0003700|GO:0010468
Aip08g02821 364 MobiDBLite consensus disorder prediction 49 81 - -
Aip08g02821 364 ProSiteProfiles Zinc finger C2H2 type domain profile. 201 228 IPR013087 -
Aip08g02821 364 Gene3D Classic Zinc Finger 200 223 - -
Aip08g02821 364 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 1 358 - -
Aip08g02821 364 SUPERFAMILY beta-beta-alpha zinc fingers 201 305 IPR036236 -
Aip08g02821 364 ProSitePatterns Zinc finger C2H2 type domain signature. 203 223 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g02821 Aip-Chr8 115854144 115859704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g02821 77 351 C2H2 Transcription Factor Family AT1G51220 58.156 5.65e-112 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip08g02821 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g02821 - - gmx:100794446 428.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g02821 08 115854144 115859704 Aip08g02821 08 115854144 115859704 ECH