Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g02811 ATGGACTCTTGTGACAAGATGAATGGAGGAGCTGTGAATATTGTTTCTGGTGGTGGTAACAAGAAAGGGAGTGATAATGGCAGCTGCTGCAACTGCCAAAAAAGTCGATGCTTGCAACTTTATTGTGAATGTCTTCGTGCTGGAAATTTGTGCAACAATTCTTGTACTTGCAAAGCGTGCGAGAATAATGAGAATAACAGGGATAAAGTGTATGAGAAGAAAAAAGAAATAGAATTACGTGATCCAGAGGCGTTTCAATCCAAGATTATTATTGGTGGGAACGAAGCAGCAAGGCACAGAAAAGGATGCAACTGCAGGAAATCAAAGTGCAAGAACAAGCACTGCGCTTGCTTCAGTGCTGGAGTTGGCTGCTCTAATCAGTGTAAATGTGACGATTGCATGAATGAGTATGGAATCGTCAACAACCAACAAGTACATGTTTTGACTAATGATAGTAATAATAATGGCAGCAACAACAATGGCAGCAACAACATCACGGTGGATAATGGATCATCTCAATTTCAACATCTATTTCCCGAGAATGATGACTTCTTACAGAATATGCAGAATTCTGAATCAGATATGGATAGAATTTTTAATGAGGTAGAGCAGGCGGCAGATTATTATTATCATGGTCAGCAAATGTCACTGAGCAGCCACAGCGAGAATGAAATCAACAATAACAACGTGAATTTGCCATCAAATCAGCAAGATAGCCATGTTCCTGCTGCTGTTTGTTATAACTATAATCTTTATGGAAACATTATTCAAAACAATGTTGCTGCACCTAATTATATTCAGCATCTTACCCCAAGGCAGATTTCTCCAGTCGAATACAACAACAACAACACTATTGATGATCTTGATTTGCAGGGACCATCATCATCTTGGTTCTATGGTGAGCCCTCTTCCCTTCCTAGCTTCTTCACTGACACAACAATTCAGGATAGTAATCAGCAGTATAAACCGACAATGAATCAGAGTGCACAGCATCTGACAAACACGCAACCACATAGTCATCCTAATAATAACCGCCTTCCATAA 1044 0.3975 MDSCDKMNGGAVNIVSGGGNKKGSDNGSCCNCQKSRCLQLYCECLRAGNLCNNSCTCKACENNENNRDKVYEKKKEIELRDPEAFQSKIIIGGNEAARHRKGCNCRKSKCKNKHCACFSAGVGCSNQCKCDDCMNEYGIVNNQQVHVLTNDSNNNGSNNNGSNNITVDNGSSQFQHLFPENDDFLQNMQNSESDMDRIFNEVEQAADYYYHGQQMSLSSHSENEINNNNVNLPSNQQDSHVPAAVCYNYNLYGNIIQNNVAAPNYIQHLTPRQISPVEYNNNNTIDDLDLQGPSSSWFYGEPSSLPSFFTDTTIQDSNQQYKPTMNQSAQHLTNTQPHSHPNNNRLP 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g02811 347 MobiDBLite consensus disorder prediction 150 172 - -
Aip08g02811 347 MobiDBLite consensus disorder prediction 325 347 - -
Aip08g02811 347 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 24 316 IPR044522 GO:0003700
Aip08g02811 347 Coils Coil 60 80 - -
Aip08g02811 347 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 24 316 - -
Aip08g02811 347 SMART CXC_2 25 66 IPR033467 -
Aip08g02811 347 SMART CXC_2 98 139 IPR033467 -
Aip08g02811 347 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 101 136 IPR005172 -
Aip08g02811 347 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 29 64 IPR005172 -
Aip08g02811 347 ProSiteProfiles CRC domain profile. 26 138 IPR005172 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g02811 Aip-Chr8 115710214 115713058 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g02811 23 138 CPP Transcription Factor Family AT3G22760 43.511 1.83e-29 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Aip08g02811 TCR 7.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g02811 K21776 - ahf:112771246 689.493