Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g02809 ATGAGGAAACCGGATAATAATATGGGGAAGGACAAAATGGGAAATAACAACACTATTATTAAGAGCAAGCTTAGAAAGGGTTTGTGGTCACCTGAGGAAGATGAGAAGCTATTAAGGTACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAGCGCGGCGCTTTTTCGCCGCAAGAAGAAGATCTCATTGTTCATTTGCATTCCATTCTTGGCAACAGGTGGTCTCAGATAGCAGCACGTTTACCTGGGCGTACAGACAATGAGATAAAGAATTTCTGGAACTCCACACTCAAGAAAAGATTCAAACTTAGCACCAATAACACCCCATCACCAAACAACAATAGTAGCAGTGATGACTCTTCATCAGATCCTAATAATGCTAATGGAATCATCATGGTGCACCTCAATGAACAACAACATGATCTCATGCCCATGTCAATGTGCATGGACTCATCATATTCTTCTTCATCAACTTCTTCATCAATCTCATCCATGCATCAACAACAAGCAGCACCAATGGTTTTTTCTGACCAATATAATGACCCATTTTCTATCTTGATAAATAATAATGATGTGCCTCAATGCTTGATGACCCAATTTGGTGGCATGGTAGAGGAGGGGCATAATGGGAATTATGGAATTATGGGGTCTAACAATAAAATAGGGCTAGAAAGAGAGTTGTCACTTCCTCCACTAGAAAGTGACAATAATGCCCCTATTATTGATGTGAAAAACCATAACAACCATTTCAATCATCATCATCATAGTGGTTGCTTCAATAATGCTCATCAGAAGGTTTCCAAGGTGGAGGAATTGTTTGGGTTTGGAAATAATAACAATAATGATCATCATGGGCATCAGCAATTGCATCAAGGGGAAAACTTGAAAATTGGAGAATGGGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACTTTTGGCACCCATTTTTTCACCTTGA 999 0.3544 MRKPDNNMGKDKMGNNNTIIKSKLRKGLWSPEEDEKLLRYXXXXXXXXXXXXXXXXXXXXXKRGAFSPQEEDLIVHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKRFKLSTNNTPSPNNNSSSDDSSSDPNNANGIIMVHLNEQQHDLMPMSMCMDSSYSSSSTSSSISSMHQQQAAPMVFSDQYNDPFSILINNNDVPQCLMTQFGGMVEEGHNGNYGIMGSNNKIGLERELSLPPLESDNNAPIIDVKNHNNHFNHHHHSGCFNNAHQKVSKVEELFGFGNNNNNDHHGHQQLHQGENLKIGEWDXXXXXXXXXXXKLLAPIFSP 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g02809 332 ProSiteProfiles Myb-like domain profile. 21 108 IPR001005 -
Aip08g02809 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 112 IPR017930 -
Aip08g02809 332 CDD SANT 65 108 IPR001005 -
Aip08g02809 332 Coils Coil 62 63 - -
Aip08g02809 332 SMART sant 62 110 IPR001005 -
Aip08g02809 332 PANTHER TRANSCRIPTION FACTOR MYB83 62 313 - -
Aip08g02809 332 MobiDBLite consensus disorder prediction 113 140 - -
Aip08g02809 332 Pfam Myb-like DNA-binding domain 63 107 IPR001005 -
Aip08g02809 332 PANTHER MYB DOMAIN PROTEIN 55 1 41 - -
Aip08g02809 332 MobiDBLite consensus disorder prediction 284 303 - -
Aip08g02809 332 Gene3D - 65 137 - -
Aip08g02809 332 SUPERFAMILY Homeodomain-like 63 115 IPR009057 -
Aip08g02809 332 PANTHER MYB DOMAIN PROTEIN 55 62 313 - -
Aip08g02809 332 PANTHER TRANSCRIPTION FACTOR MYB83 1 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g02809 Aip-Chr8 115665624 115669387 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g02809 1 312 MYB Transcription Factor Family AT3G08500 37.110 8.86e-37 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Aip08g02809 Myb_DNA-binding 1.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g02809 K09422 - gmx:100797469 198.749