Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g02798 ATGCTCCATTCTCCTACCATAGGAATACTTGACTTAAGATGCCAGGAAAACCCGAATCAGACGAATGGCGGGCGAAGCGAAGCCAGCAGATTCAGTTTCAAGCTTCCATTTATGCTCAGCCCTGGTGGCGCGGCGGAGCCGATGCAGTCTTTGATTTCTCAATCACTACCTGGAATTGATAACTCAGGTGGAGATGTTACCAAAGAGCACCAGAACATCAAACATGCTTTTTCCTCAACCCCATTTACCATGGGAAAACACCTTGGTCCGAATTCCGAGACTGAAAGCATTGGTCATTCAATTGTTTTAACTTCACAAGCTTATTTTGATGCACATTATGGTGGAGGCTTGACACCCTATGGGCAACAAACTATGATAAACCCTCAGCTGTATGGGATGAACCATGCTAGAATGCTTTTGCCACTTGAAATGGAAGAGGAGCCGGTTTATGTCAATGCAAAGCAGTATCATGGTATTCTGAGAAGAAGACAGTCACGTGCTAAGGCCGAGCTCGAAAAGAAAGTGATTAAAGTTAGAAAGCCATATCTTCATGAGTCGCGTCACCTTCATGCTATGAGAAGGGCAAGGGGTAATGGTGGTCGCTTTCTTAATACAAAGAAGCTTGAAGGCAACAACAACAGTGTAAACCCCTCAATGGAATCCGGAAGCTCGCTTTCCGCGGCTCCTTTACATTCCAACAATGATCACTATGTTGTGTCGCAGTCCATGGTTCACGACATGGAGAAAATGCAGAATTTCACCATTGGTTTCCATGGTAGCAATGGCAAGGCATGCTTATGCATGGAGCCCCAAATGGGGCTATTGAATGACACCTCCCCCCAAGTTGGTGGTTCCCTCTGGCACATGATGACTCTAAAGATGAAGTTGGTGAGCTTTGTCTCATCCAACTTTGGAGGAGACCACCGTTACAATAGAGAGTTTCATCTCAGGCAACTCATTCTTGGCTCAGTTAAATGGTGA 981 0.4557 MLHSPTIGILDLRCQENPNQTNGGRSEASRFSFKLPFMLSPGGAAEPMQSLISQSLPGIDNSGGDVTKEHQNIKHAFSSTPFTMGKHLGPNSETESIGHSIVLTSQAYFDAHYGGGLTPYGQQTMINPQLYGMNHARMLLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKVRKPYLHESRHLHAMRRARGNGGRFLNTKKLEGNNNSVNPSMESGSSLSAAPLHSNNDHYVVSQSMVHDMEKMQNFTIGFHGSNGKACLCMEPQMGLLNDTSPQVGGSLWHMMTLKMKLVSFVSSNFGGDHRYNREFHLRQLILGSVKW 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g02798 326 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-1 66 241 - -
Aip08g02798 326 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 147 202 IPR001289 GO:0003700|GO:0006355
Aip08g02798 326 MobiDBLite consensus disorder prediction 205 227 - -
Aip08g02798 326 PRINTS CCAAT-binding transcription factor subunit B signature 148 170 IPR001289 GO:0003700|GO:0006355
Aip08g02798 326 PRINTS CCAAT-binding transcription factor subunit B signature 179 202 IPR001289 GO:0003700|GO:0006355
Aip08g02798 326 MobiDBLite consensus disorder prediction 13 27 - -
Aip08g02798 326 ProSitePatterns NF-YA/HAP2 subunit signature. 150 170 IPR018362 GO:0003677|GO:0016602
Aip08g02798 326 MobiDBLite consensus disorder prediction 1 27 - -
Aip08g02798 326 ProSiteProfiles NF-YA/HAP2 family profile. 145 205 IPR001289 GO:0003700|GO:0006355
Aip08g02798 326 SMART cbf3 144 205 IPR001289 GO:0003700|GO:0006355
Aip08g02798 326 MobiDBLite consensus disorder prediction 200 227 - -
Aip08g02798 326 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 66 241 IPR001289 GO:0003700|GO:0006355
Aip08g02798 326 Gene3D - 145 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g02798 Aip-Chr8 115383308 115388495 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g02798 95 228 CCAAT-HAP2 Transcription Factor Family AT5G12840 52.239 1.36e-40 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Aip08g02798 CBFB_NFYA 2.8e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g02798 K08064 - gmx:100782085 271.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g02798 08 115383308 115388495 Aip08g02798 08 115383308 115388495 ECH