Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g02784 ATGGGTTCGACGGTGGATACACTCCCAGCTAAACGTCCCGCTCCAACTGAATATTCTTCTGAGGGACACAAAAGACTGAAATTGTCATCTGATGGCTCCCCATACTCAAATGTTGTGGATTACAGTGACCCATTTGCAATATCTGCTGTTCTGAACCGGCTTGACAGTGGGGAATTTGGAAGTGTCACGAAGGACATAGAGGCCCTCAGAGTGCAGAAAATGCAAATGTTGGGACCATACTTTGCAAAATATCCTTCCCTGATCAATCAATTATTGAAAGTGGCAACTAACCATACTGAAGAAACTGTCAAATTGGAATTTGAACCAGTTACTAGTGCACATCAGGGTGTGATAAAGTTGGAGGGTGGGCAAATTAAGAAGAATGTTCCTGCAGCCCCAACATCTATCGTAATTATTGATTCAGATGATGAGGATGATAATGATAAAAATTCTGATCCTCGATTTCATCAAGTAGTGTTACCTGCACCAGTAAGACCATCTCCTGCGCTGCAGATGAATGGTCATGCTTCCATTGAATTCGATGAGAAAAGTAAAGTTCCAAAAATTGAGAAAAGTCTGGATGGTCAAGATACGAGTCCCAGAGACAAAGGTATCTATGTTGGTATACAGGAGGAAGAAGATGAGGTTGAAGAGAAAGATGATGGCTTAGGTGATATTTGGAGGGAAATGTCAATGGCTATAGAATGTTCCAAGGATGCTTCTATGGATGTGCTCGATGAAGAAGAGGAAAAGGAGGAAGACTGTGATCATTCTTTTGTTTTAAAAGACGATCTTGGTTATGTTTGTCGTGTATGTGGGGTTATCGAAAGAAGAATTGAGACCATATTTGAGTTTCAGTACAAGGTTAAAAGGAGTACAAGGACTTATGCATCTGATTCATGGAGTTCCAAAGAGAAAGCTGCGATGCATGGGATCCACGTAGCTGAAGATGATCTTGTAGTGACTGATATTTCTGCACACCCGAGACATATGAAGCAAATGAAGCCACATCAAGTCGAGGGATTCAATTTTCTCGTGAGGAACCTCGCGGGTGATAATCCTGGGGGTTGCATCTTGGCTCATGCTCCTGGATCAGGGAAGACTTTCATGATAATTAGTTTCATGCAAAGTTTTCTGGGCAAATATCCCAATGGTAGACCGCTAGTGGTGCTTCCCAAGGGAATACTATCAATTTGGAAAAAAGAATTCCAGAGATGGCAAGTTGAGGATATACCACTTCTGGATTTTTACAGTGTGAAGGCTGACAATAGATCTCAGCAACTGGAAGTTTTGAAAAAATGGAAGGACCAGAAGAGTATCCTTTTCTTAGGATACAAACAGTTCTCCACAGTTGTATGCGATGATTCCACCAGCAGAGCATCAGTAGACTGCCAGGAGATATTGCTTAAGGTTCCTTCTATTCTCATTTTAGATGAAGGGCACACTCCAAGGAATGAGAATACTGATATCATGCAGTCCCTTTCCAAAGTTCGAACACCTCGAAAAGTTGTACTGTCAGGAACTTTATATCAGAATCATGTGCAGGAGGTGTTTAACATCTTAGATCTGGTGCGGCCGCCAAAATTTTTGAAGATGGAAACTTCTAAGCCTATTGTCAAGCGCATTTATAGCAGAGTGCATGTACCTGGTGTTCGAAACTTCTGTGATTTAGTCGAACATACTTTGCAGAAGGATACTGATTTCAGAAGAAAGGTGGCCGTCATTCAAGATTTGCGTGAGATGACAAGCAAGGTGCTTCACTACTATAAAGGAGATTTTCTGGACGAGCTTCCTGGTATGGTTGATTTCACAGTGGTGCTCAACCTTACCTCTAGACAGAAGCATGAAGTTGAGAAATTGAAGAGGCTTTCCAGGAAGTTCAAAATATCTTCTGTTGGCAGTGCTACCTATCTTCATCCTAAGTTGAAACCTGTTGCTGAAAAATGTGGTGAGAACTCCATATCTGATAACATCATCGATGAGTTGATTGATAAATTAGATGTGAAAGATGGGGTGAAGTCAAAATTCTTTCGCAACATGCTCAACTTGTGCGAGTCTGCTGGGGAGAAGCTTCTGGTTTTCAGTCAATATCTCCTACCTCTGAAATATTTGGAAAGGTTAGCAGTAAAATGGAATGGATGGAGCCTTGGCAAAGAAATTTTTGTCATCTCAGGAGAATCAAGCCCTGAACAACGTGAGTGGTCAATGGAAAAGTTCAACAGCTCGTCTGATGCCAAAGTCTTCTTTGGCTCAATCAAGGCATGTGGGGAGGGCATATCACTGGTTGGGGCATCCCGCGTAATCATTATGGATGTTCATCTCAATCCATCAGTTACTCGCCAAGCTATTGGCCGTGCATTCCGACCAGGTCAGACAAAGAAAGTCTTTGTATATCGGTTGTTGGCAGCAGATTCTCCAGAAGAGGAAGATCACGCTACTTGTTTCAAGAAGGAGTTGATTTCAAAGATGTGGTTTGAATGGAATGAGTATTGTGGTGATAGCGCTTTCGAAGTGGAGAGCGTCCCTGTGAAAGAATGTGGTGATTTCTTCCTCGAAAGTAATTCATTAGCTGAAGATGTTAAAGCTCTATATAGAAGGTAG 2601 0.4195 MGSTVDTLPAKRPAPTEYSSEGHKRLKLSSDGSPYSNVVDYSDPFAISAVLNRLDSGEFGSVTKDIEALRVQKMQMLGPYFAKYPSLINQLLKVATNHTEETVKLEFEPVTSAHQGVIKLEGGQIKKNVPAAPTSIVIIDSDDEDDNDKNSDPRFHQVVLPAPVRPSPALQMNGHASIEFDEKSKVPKIEKSLDGQDTSPRDKGIYVGIQEEEDEVEEKDDGLGDIWREMSMAIECSKDASMDVLDEEEEKEEDCDHSFVLKDDLGYVCRVCGVIERRIETIFEFQYKVKRSTRTYASDSWSSKEKAAMHGIHVAEDDLVVTDISAHPRHMKQMKPHQVEGFNFLVRNLAGDNPGGCILAHAPGSGKTFMIISFMQSFLGKYPNGRPLVVLPKGILSIWKKEFQRWQVEDIPLLDFYSVKADNRSQQLEVLKKWKDQKSILFLGYKQFSTVVCDDSTSRASVDCQEILLKVPSILILDEGHTPRNENTDIMQSLSKVRTPRKVVLSGTLYQNHVQEVFNILDLVRPPKFLKMETSKPIVKRIYSRVHVPGVRNFCDLVEHTLQKDTDFRRKVAVIQDLREMTSKVLHYYKGDFLDELPGMVDFTVVLNLTSRQKHEVEKLKRLSRKFKISSVGSATYLHPKLKPVAEKCGENSISDNIIDELIDKLDVKDGVKSKFFRNMLNLCESAGEKLLVFSQYLLPLKYLERLAVKWNGWSLGKEIFVISGESSPEQREWSMEKFNSSSDAKVFFGSIKACGEGISLVGASRVIIMDVHLNPSVTRQAIGRAFRPGQTKKVFVYRLLAADSPEEEDHATCFKKELISKMWFEWNEYCGDSAFEVESVPVKECGDFFLESNSLAEDVKALYRR 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g02784 866 MobiDBLite consensus disorder prediction 1 30 - -
Aip08g02784 866 Pfam SNF2-related domain 354 618 IPR000330 GO:0005524|GO:0140658
Aip08g02784 866 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 676 839 IPR001650 -
Aip08g02784 866 PANTHER PROTEIN CHROMATIN REMODELING 35 17 866 - -
Aip08g02784 866 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 348 527 IPR014001 -
Aip08g02784 866 SMART helicmild6 705 790 IPR001650 -
Aip08g02784 866 CDD SF2_C_SNF 664 801 - -
Aip08g02784 866 Pfam Helicase conserved C-terminal domain 681 789 IPR001650 -
Aip08g02784 866 SMART ultradead3 330 541 IPR014001 -
Aip08g02784 866 Gene3D - 598 855 IPR027417 -
Aip08g02784 866 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 17 866 IPR044567 GO:0080188
Aip08g02784 866 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 473 828 IPR027417 -
Aip08g02784 866 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 319 547 IPR027417 -
Aip08g02784 866 Gene3D - 301 548 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g02784 Aip-Chr8 115087220 115094341 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g02784 687 808 RAD5 or RAD16-like Gene Family AT5G43530 36.885 5.81e-14 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aip08g02784 SNF2_N 5.6e-22 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g02784 K10875 - gmx:100780454 1296.57