Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g02742 ATGGCTTCGCCGTCTCCATCAACGGAAAGAAGGGTTGCCGGGGATGAAGATACCACTGGAGGCGTGCGCGTCGCTGATGAACTAGAAATGTCTGACGGAGCAGAGCACGGAGTTGGATCGTTTGAGGGCGAAGGCTCTGCAGGGATGGAGTCGGACGAGTACGACTTTCAGGAAGATGAAATAGAACACGACCATCATGTAGAGGCCGATGTCGACAATGGGGATGCGGTTGAATTGGAAGACAGTTTGGACGGCGCCGGAGGAATGTCTGACAATTATGCGGAAGACGAGTTTTACGCTGTTGATTCCGTGGAGTCGATAGGTTGGATTGATTTTTTGAACTTGAGCGAGGATGATATTTTCCGGTTTAATTTCGCAGACGTTGACATTGCATTTGAGTTATACCAGCAATATGCAAAGCACCATGGCTTCGGGGCGAGACGTTCCAGAAGCGAAAAACGCGGCGAAGTAAGGATACGGCAGGAGTTCGTATGCCACCGACAAGGGTACCGATCCCCGAAGTTCTACTCAATGCCTAACCGGCAAAAGAGGCCGAGGGCCGAGACACGTTATGGATGCCCTGCAAGGATGCTACTCCGCATGGACGATGAATCAGGACGTTGGCACGTTGCGTACTTTTCAGACGCGCATAACCACCACGTTCTTGAGTTGCGATTTTCTTCCATTCTTCCAGGCCATCGGAGGATGAGCGAAGCGGACATCGAGCAGATGAACGACATGCGCAAAGGGGGCATTGGCGTCTCCCGAATCCACGGTTTTATGGCGAGCCTAGCCGGCGGGTATCATAATGTCCCGTACACAACAAGGGACATGCACAATGTAAATGCGAAGCAACGAAGGGAGGGTGGCCTAGATGCGGAATCGTGCCTAAGGTATCTCCGAGAGTGCAAGACAAATGATCCAGCACTGTACTACAAGAAAGTTGTTGACGGTGAGGGCGTGTTGCAACATTTGTTTTGGTGTGATGGCACCAGCCAAATTGATTACCAGGTGTTTGGAGACGTGGTTGCATTTGATGCAACATACAAGAAAAACGTTTACCTTTCACCTCTTGTAGTATTCTCCGGTGTGAATCACCACAACCAAACGGTTGTCTTTGCCGCTGCACTGGTGGCAGACGAGAAAGAAGAGACTTATGTCTGGCTGCTTCAACAGTTGCAAACTTCAATGAAAGGGAAGACTCCCGTGTCCATAATAACCGACGGTGATAGGCAAATGAAGTCTGCGATCGAGCAAGTTTTTCCGGAGGCTTACCATCGACTCTGCGCTTGGCATCTACTCCGAAACGCCACGAGCAACATCGGAAAGCCCAAATTCACTAGGATGTTTAGGGATTGCATGTTTGGCGACTACGAGGTCCGAACATTCCAGAGAAAGTGGTTTGAGATGGTTGAGAAATTTGGCGTCGCCGATAAAAGATGGGTACAGGACATGTACGAGAGAAGGCACAGTTGGGCCACAGCACACATACGGGGAAAGTTCTTTACTGGATTTCGAACAACATCAAGGTGTGAGGGCTTGCATGCTGTGATATCACGGTATGTTAAGTCTCGATACAACTACACTGAGTTTTTACGTCATTTCCATCGATGCTTGATGTTCGTGCGTGCAAAGGAGGTGGAGGCTGATTTCGAGTGTGCAAAGGGTGACCCTGTTATGACCACCAACCTGAAACAGCTGGAGCGGAGTGCAGCCGAGAACTACACTCGTGCAATATTCTATTTGTTTGTTCCCATTCTTGACAGGGCCTGCGCAATGAGGGTGGTTGACTCTGAAGACAACGGTTCCTATTTTATCCACACCGTCTCTCGATACGGCACTCCGGGGAAGGATTGGCGTGTTGTTGCAACGTCTGATACGAGGGAGGTCCGATGCACGTGCATGAGAATGGAATGTTTCAGGGTCCCCTGCAAACATATAATTGCGGTGCTTGTTCTTAACAATGTTCATGAGATCCCGAGGTCTCTGATATTGCCGAGATGGACCAAGGATGCAAAACTTGTGGCGGTGCAGTCGATGGGCGTGATTTGGGATTCTGTACAACTGACGCAACACTGGTGCCTGATGGATTGGTACCGGAAAGTGTGCAAGATTGCATGTCACAACACTGAAAAGTTCCAGTTTGCAAGAGACATTGTCATGCTGATGCTGAAGCACTTCGAGAACGAAGATGCAGGGAACACCCGTTTTCCACCCGAGGGGCCACCTACTGAGGATGGCAGAGCCTCGACGCGGAATCCACCCAAGCGCAATACAAAGGGTAACGGTGTTCATGGTGGAAAGAAAACCCAGCGATGTCGTTTGTGCCGGGAGGTGGGACACAACAGGACGACTTGTCCAGACCGCCCCACGATGGAGTCATCCAGCGCAGTTGCAGATGACATGGATTCGATGGACACTGACATGGTGCTCTATGATAACCTATCCGGCGATATGTATGCGACCGCCGAGATTTCTTCGTTCCAATGCTCCGATAGTGACACGCAGGCTGGGTTTGCTAACAACAACTTCGCTGGGACCAACACGTCCGGGCCTGTCATGTCTCTCGCCGATTGA 2577 0.5056 MASPSPSTERRVAGDEDTTGGVRVADELEMSDGAEHGVGSFEGEGSAGMESDEYDFQEDEIEHDHHVEADVDNGDAVELEDSLDGAGGMSDNYAEDEFYAVDSVESIGWIDFLNLSEDDIFRFNFADVDIAFELYQQYAKHHGFGARRSRSEKRGEVRIRQEFVCHRQGYRSPKFYSMPNRQKRPRAETRYGCPARMLLRMDDESGRWHVAYFSDAHNHHVLELRFSSILPGHRRMSEADIEQMNDMRKGGIGVSRIHGFMASLAGGYHNVPYTTRDMHNVNAKQRREGGLDAESCLRYLRECKTNDPALYYKKVVDGEGVLQHLFWCDGTSQIDYQVFGDVVAFDATYKKNVYLSPLVVFSGVNHHNQTVVFAAALVADEKEETYVWLLQQLQTSMKGKTPVSIITDGDRQMKSAIEQVFPEAYHRLCAWHLLRNATSNIGKPKFTRMFRDCMFGDYEVRTFQRKWFEMVEKFGVADKRWVQDMYERRHSWATAHIRGKFFTGFRTTSRCEGLHAVISRYVKSRYNYTEFLRHFHRCLMFVRAKEVEADFECAKGDPVMTTNLKQLERSAAENYTRAIFYLFVPILDRACAMRVVDSEDNGSYFIHTVSRYGTPGKDWRVVATSDTREVRCTCMRMECFRVPCKHIIAVLVLNNVHEIPRSLILPRWTKDAKLVAVQSMGVIWDSVQLTQHWCLMDWYRKVCKIACHNTEKFQFARDIVMLMLKHFENEDAGNTRFPPEGPPTEDGRASTRNPPKRNTKGNGVHGGKKTQRCRLCREVGHNRTTCPDRPTMESSSAVADDMDSMDTDMVLYDNLSGDMYATAEISSFQCSDSDTQAGFANNNFAGTNTSGPVMSLAD 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g02742 858 SUPERFAMILY Retrovirus zinc finger-like domains 760 793 IPR036875 GO:0003676|GO:0008270
Aip08g02742 858 MobiDBLite consensus disorder prediction 1 52 - -
Aip08g02742 858 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 120 713 IPR031052 GO:0006355
Aip08g02742 858 ProSiteProfiles Zinc finger SWIM-type profile. 619 655 IPR007527 GO:0008270
Aip08g02742 858 MobiDBLite consensus disorder prediction 10 33 - -
Aip08g02742 858 Pfam FAR1 DNA-binding domain 134 222 IPR004330 -
Aip08g02742 858 MobiDBLite consensus disorder prediction 67 88 - -
Aip08g02742 858 PANTHER OS02G0262500 PROTEIN 120 713 - -
Aip08g02742 858 MobiDBLite consensus disorder prediction 731 768 - -
Aip08g02742 858 Pfam MULE transposase domain 342 436 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g02742 Aip-Chr8 114179707 114182505 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Aip08g02742 MULE 7.3e-30 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g02742 - - ahf:112770447 1540.01