Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g02576 ATGGAGGTGGAAGGCTATGGCTCAACAGAGGTAGAACGCTATGGCTCAATGTGCATCAACGACAATGACAACCCCTATTTTGGGGAAGAGTCTGTGTCACAAATCAAACGGCGATTGCAGATTCTTATTGACGTAAACAAATTCAGGACGGAGAGATTACCAGGGATGGTTGAGGAGAAGGGGTTGTGTGACACCTTCATACACTCACGTCGCAGTTCTCTTCCACGGGACTGTTGGTGCAACCAAGTGGGATCTGGGGGAAGGGGCAGTCACTGTCGAACGGTCATGGCGGCATCCCGTTTCTTGAAATTGTATAATAAGGACATCATCCACTTGATTGGCCTCGACGATGTAGCTTTTCGATTAGGTGTTGAGAGGCGGCAGATCTATGATATAGTGAACGTCTTAGAGAGTGTCGGGGTGCTTTTTAGAAAAGCTAAGAATCAGTATACTTGGAAAGAGTTTGCTGCTATTCCACCTTCAACCTGGTTAATAATGGCTTCTACAAGTAGAAGATCTACAAGTGGTTCCTATGGCAGCGGCAATGTAACGGGTGAACGTTTTTGTGAGTGTGGTTTAAGAGTTCCGTTACAAGTCTCAAATAGCATTACCAACCCGGGTAGAAAGTATTATGCCTGTCTTGTAAGACGATGTGGATGGTTTAGATGGGCAGGTCCAAGTATCCAACATGCTGAAGTTGCAGATGATCGCTCTTGTCATTTGAATTCCAATTTGAAGTCAATCGACCGAGTTGAAAATCTGCATAATGATGTTGTATTTCTGAAAATTTTAGCGGTCTTTCAGCTTTTGTATTTGTAG 819 0.442 MEVEGYGSTEVERYGSMCINDNDNPYFGEESVSQIKRRLQILIDVNKFRTERLPGMVEEKGLCDTFIHSRRSSLPRDCWCNQVGSGGRGSHCRTVMAASRFLKLYNKDIIHLIGLDDVAFRLGVERRQIYDIVNVLESVGVLFRKAKNQYTWKEFAAIPPSTWLIMASTSRRSTSGSYGSGNVTGERFCECGLRVPLQVSNSITNPGRKYYACLVRRCGWFRWAGPSIQHAEVADDRSCHLNSNLKSIDRVENLHNDVVFLKILAVFQLLYL 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g02576 272 Pfam E2F/DP family winged-helix DNA-binding domain 98 153 IPR003316 GO:0005667|GO:0006355
Aip08g02576 272 Pfam GRF zinc finger 188 224 IPR010666 GO:0008270
Aip08g02576 272 PANTHER TRANSCRIPTION FACTOR E2F 98 161 IPR015633 GO:0000978|GO:0006357
Aip08g02576 272 SUPERFAMILY "Winged helix" DNA-binding domain 98 152 IPR036390 -
Aip08g02576 272 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 98 161 - -
Aip08g02576 272 SMART E2F_TDP_2 93 154 IPR003316 GO:0005667|GO:0006355
Aip08g02576 272 Gene3D - 94 156 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g02576 Aip-Chr8 109203996 109207168 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g02576 99 159 E2F-DP Transcription Factor Family AT3G48160 72.131 1.54e-23 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Aip08g02576 E2F_TDP 1.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g02576 - K09391 adu:107464587 177.563