Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g02573 ATGGCGCTATGGATGGAAAATGGTTCAGAGCCACTCACCGAAGCCGAGAAGGCAGACCTTGAAGCCATTGCTGCCATCAAAGAATCTGCAGCCATTGAACTCAAGGAAAAGGGTAACGAGTATGTGAAGAAGGGTAAGAAGCATTACTCCGAAGCAATTGATTGCTACACAAGGGCAATTAATCAGAAAGCATTGAATGATTCTGAGAGCTCTGTTCTTTTTGCGAACAGAGCGCATGTCAATTTGCTTCTTGGGAACCACCGGCGTGCCCTCTCTGATGCTCAACAAGCACTCAACTTGTCCCCCTCCAACATAAAGGCCATTTATAGAGCTGTCAAAGCATCTCTATCACTGAATTTATTGGCTGAAGCACAAGACTATTGCCGAAAGGGTCTTAAGTTGGACCCCAATAATGAGGAACTTAAGAGGCTTGACCAACAGATTCGTATGAAGATATCTGAGAAGGAGAAGCTTGACGCTGAAGTCTCTAAAGCCATATTGGAGGCAGAAGAACTTGTGTCTGCAATAGAAAATAGAGGATTGAAGATTGGAAAGGCAATGTATCGAGAACTCACCGGGTTAAAGAAACCGGTGTTAAACAAAAATAATATCCTTCATTGGCCTGTCCTTCTTCTGTATGCAGAGGTTATGTCCAGTGATTTCATTGAGGATTTCTGTGAGACTGACATGCTTTCACTTCCAAACATGTTTTCAGCAGACCAACCACTCCCATGGGATGTTGAAAACAATTACAAACGTGATTTTGTTGAATTATACTATGAGGCTGGCTCTGGAGTTCGTCTATCAAAGGAGAAACTTCTTCATTGTTTATTAGAGGGAACTGCAGCTTCTCATGTTGGTGATGAAGAGAAAGATGCAGTTGAGGATTTTAAACACACTGCAGGTTCCCCAAAATGGATCAAAGTAAATGAGAAGAAAACGCTCCAAGATATCCTCAAAGAGCCTAATTTCGTAATCCCCGAAATCCCAGTCTTCTATGTTGTTTCCAAGCAATCCAGCTTTTATAGCAAGTTCAAATCTGGAAAATGGGCTCCTCCAAGCATATGA 1068 0.4232 MALWMENGSEPLTEAEKADLEAIAAIKESAAIELKEKGNEYVKKGKKHYSEAIDCYTRAINQKALNDSESSVLFANRAHVNLLLGNHRRALSDAQQALNLSPSNIKAIYRAVKASLSLNLLAEAQDYCRKGLKLDPNNEELKRLDQQIRMKISEKEKLDAEVSKAILEAEELVSAIENRGLKIGKAMYRELTGLKKPVLNKNNILHWPVLLLYAEVMSSDFIEDFCETDMLSLPNMFSADQPLPWDVENNYKRDFVELYYEAGSGVRLSKEKLLHCLLEGTAASHVGDEEKDAVEDFKHTAGSPKWIKVNEKKTLQDILKEPNFVIPEIPVFYVVSKQSSFYSKFKSGKWAPPSI 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g02573 355 ProSiteProfiles TPR repeat profile. 71 104 IPR019734 GO:0005515
Aip08g02573 355 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 4 1 351 - -
Aip08g02573 355 Pfam Tetratricopeptide repeat 106 138 IPR019734 GO:0005515
Aip08g02573 355 SUPERFAMILY TPR-like 22 157 IPR011990 GO:0005515
Aip08g02573 355 Gene3D Tetratricopeptide repeat domain 24 178 IPR011990 GO:0005515
Aip08g02573 355 SMART tpr_5 105 138 IPR019734 GO:0005515
Aip08g02573 355 SMART tpr_5 71 104 IPR019734 GO:0005515
Aip08g02573 355 SMART tpr_5 31 66 IPR019734 GO:0005515
Aip08g02573 355 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 4 1 351 - -
Aip08g02573 355 Coils Coil 141 175 - -
Aip08g02573 355 Pfam Cns1/TTC4 Wheel domain 202 265 IPR044059 GO:0051879
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g02573 Aip-Chr8 109139011 109142457 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g02573 30 160 Calmodulin-binding Proteins AT3G25230 30.986 8.38e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g02573 K24927 - gmx:100783179 547.354