Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g02564 atgaccctagactATTGGGTTTACCGGGTGACGTCCAACCTACTGCCAGCCAGCCTAGGGACGTTCTTCACCTTCTCCGGGACGTCCTTGATCATCACCGACGTGCCAGGGAGAGTTTCTTCCGTCACCGCCGGACCTAACTCTTCCTCCGCATCCCACTTGCTTCAAGCTTCTTCTTGGCCATCGCCGCCCACGTCCTCCGCCGCCACTACTGCTACCGACGCCGACATTGGGCCGCCAGGGGTTGTCTCCAGAGTTTCTTCCGTCACCGCCGGACCTAACTCTTCCTCCGCATCCCACTTGCTTCAAGCTTCTTCTTGGCCTGCTGCCATCGCCGCCGCTGCCGCTGCCGCAAATGGTGGCTCCCCCGCGCTCGACCTGAAACGCTCTTCTGAATTTGGGCAAAGCGAAGCTTGGTATTCTACAAACTCACTAGCTAAGCGCCCTAGATATGAAAGTGGAAGCAATTTGCCTATATATCCCCAGAGACCAGGAGAGAAGGATTGTGCCCACTATATGCTTACAAGAACCTGTAAATTTGGAGATAGCTGCAAATTTGACCATCCTATTTGGGTTCCTGACGGTGGAATACCAGATTGGAAAGAGATTTCAAACACTGTTTCGAGTGAAACACTTCCTGAGAGAATAGGAGAACCAGACTGTCCATACTTTATTAAAACTCAGAGATGCAAGTTTGGTTCAAAGTGCAAGTTTAATCATCCAAGATCTTCTGAAAATGGTGAAATTTCTGCCTTACCTGAGAGGCCATCAGAGCCCCTCTGTGCGTTCTATGTGAAGACTGGGAGATGTAAATTTGGTGCTACTTGTAGATTCCATCACCCGAAAGACATCCAGATTCTGACGTCTGATGAACTGAGTTATAATGCTGAACAAACACAAGAAAATTCCATAAGGGAGGGAGCAACAGGAGATACACAATCTTTCTTGTCTCCACTATTGCATAATAGCAAAGGACTTCCAGTAAGAATGGGGGAAGTTGATTGCCCATTCTACATGAAAACTGGAAGTTGCAAGTATGGTGCTACATGCCGCTACAACCATCCTGACAGGAATGCAATTTATCCGCCAGTTGCTACATTTGGTTCTTCTATGGTGACATCTATGGCTGCTAATCTAAGTATTGGATCTATAAATCCTTCTGTACCTATTTATCAAGCATATGACCCAAGGTTGTCAAATCCAATGTCTCAACTTGGAGTGGCAGAAATTATGTATCCTCAGCGTCCTGGACAGATTGAATGCGATTTCTATATGAAAACTGGTGAGTGCAAATTCGGGGAAAGATGCAAGTTCCATCACCCTCTTGACCGATCAGCAACATCAAGCATTAAGCTCACTCCCGCAGGATTACCTAGGAGAGAGGGTGTTAGCATCTGTCCGTATTACATGAAAACTGGCACTTGCAAGTTTGGTGCGACCTGTAAGTTTGACCACCCGCCACCCGGAGAAGTTATCGAGATAGCAAAATCGCAAGGAACATCCGCAACTGACGGAGGAGAAGCAGATTCATGA 1533 0.4716 MTLDYWVYRVTSNLLPASLGTFFTFSGTSLIITDVPGRVSSVTAGPNSSSASHLLQASSWPSPPTSSAATTATDADIGPPGVVSRVSSVTAGPNSSSASHLLQASSWPAAIAAAAAAANGGSPALDLKRSSEFGQSEAWYSTNSLAKRPRYESGSNLPIYPQRPGEKDCAHYMLTRTCKFGDSCKFDHPIWVPDGGIPDWKEISNTVSSETLPERIGEPDCPYFIKTQRCKFGSKCKFNHPRSSENGEISALPERPSEPLCAFYVKTGRCKFGATCRFHHPKDIQILTSDELSYNAEQTQENSIREGATGDTQSFLSPLLHNSKGLPVRMGEVDCPFYMKTGSCKYGATCRYNHPDRNAIYPPVATFGSSMVTSMAANLSIGSINPSVPIYQAYDPRLSNPMSQLGVAEIMYPQRPGQIECDFYMKTGECKFGERCKFHHPLDRSATSSIKLTPAGLPRREGVSICPYYMKTGTCKFGATCKFDHPPPGEVIEIAKSQGTSATDGGEADS 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g02564 510 SUPERFAMILY CCCH zinc finger 463 487 IPR036855 GO:0046872
Aip08g02564 510 ProSiteProfiles Zinc finger C3H1-type profile. 215 243 IPR000571 GO:0046872
Aip08g02564 510 ProSiteProfiles Zinc finger C3H1-type profile. 415 443 IPR000571 GO:0046872
Aip08g02564 510 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 37 128 499 - -
Aip08g02564 510 Gene3D - 252 365 - -
Aip08g02564 510 SUPERFAMILY CCCH zinc finger 416 443 IPR036855 GO:0046872
Aip08g02564 510 MobiDBLite consensus disorder prediction 53 89 - -
Aip08g02564 510 ProSiteProfiles Zinc finger C3H1-type profile. 460 488 IPR000571 GO:0046872
Aip08g02564 510 SUPERFAMILY CCCH zinc finger 164 190 IPR036855 GO:0046872
Aip08g02564 510 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 418 441 IPR000571 GO:0046872
Aip08g02564 510 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 462 487 IPR000571 GO:0046872
Aip08g02564 510 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 165 189 IPR000571 GO:0046872
Aip08g02564 510 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 258 282 IPR000571 GO:0046872
Aip08g02564 510 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 331 355 IPR000571 GO:0046872
Aip08g02564 510 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 218 242 IPR000571 GO:0046872
Aip08g02564 510 ProSiteProfiles Zinc finger C3H1-type profile. 255 283 IPR000571 GO:0046872
Aip08g02564 510 ProSiteProfiles Zinc finger C3H1-type profile. 329 357 IPR000571 GO:0046872
Aip08g02564 510 Gene3D - 162 251 - -
Aip08g02564 510 Gene3D - 414 501 - -
Aip08g02564 510 PANTHER CCCH ZINC FINGER/TIS11-RELATED 128 499 IPR045877 GO:0003729
Aip08g02564 510 SUPERFAMILY CCCH zinc finger 258 283 IPR036855 GO:0046872
Aip08g02564 510 SMART c3hfinal6 255 282 IPR000571 GO:0046872
Aip08g02564 510 SMART c3hfinal6 460 487 IPR000571 GO:0046872
Aip08g02564 510 SMART c3hfinal6 163 190 IPR000571 GO:0046872
Aip08g02564 510 SMART c3hfinal6 215 242 IPR000571 GO:0046872
Aip08g02564 510 SMART c3hfinal6 329 356 IPR000571 GO:0046872
Aip08g02564 510 SMART c3hfinal6 415 442 IPR000571 GO:0046872
Aip08g02564 510 ProSiteProfiles Zinc finger C3H1-type profile. 163 191 IPR000571 GO:0046872
Aip08g02564 510 MobiDBLite consensus disorder prediction 53 73 - -
Aip08g02564 510 SUPERFAMILY CCCH zinc finger 220 243 IPR036855 GO:0046872
Aip08g02564 510 SUPERFAMILY CCCH zinc finger 332 357 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g02564 Aip-Chr8 108833203 108848429 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g02564 458 499 C2H2 Transcription Factor Family AT3G02830 48.837 7.22e-06 46.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aip08g02564 zf-CCCH 2.4e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g02564 - - gmx:100801417 657.521