Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g02532 ATGGGGAAAGCATGTAGTTGGTCTCTTATATCCATTTTCATTATTATCCTTTCATGCTGTGTGTCTGAAATACATGGAAACAAACAAGGTCGGGCTCTGGACAAGTTTTTCAAGGCCAAGTTCAAAGCAGGATCACAAATCAACAGGGGGCACTTCGAGGCACCAGAGATTGTGCATGAAGCCGCCACTGCCACCGCCGCCGATGTGGGTTCTCAGGCGGGTCTGAAAGAGAAAGACAGAATTGTGAGTTTGCCGGGGCAGCCAAAGGTGAATTTCAGTCAGTATGGAGGGTATGTCACGGTTAACCATTTGGCAGGACGTGCCTATTATTATTACTTTGTGGAAGCTCAGACTTCTAAGGAAACAAAGCCCCTTCTTCTTTGGCTCAATGGAGGTCCTGGATGTTCATCCCTTGCCTATGGAGCAATGCAAGAACTTGGACCCTTCCGAGTAAACAGTGATGGACGAACACTTTACCTAAATAGATATCGTTGGAATCATGCTGCAAATGTTTTGTTCCTGGAGTCACCAACTGGAGTAGGATTTTCTTACTCAAACAGATCATCAGATTATGCTGATTATTATAATGATGACAAGAAAACAGCAGCAGATAACTATGTATTCTTGGTGAATTGGTTGGAGAGGTTTCCTGAATATAAGAAGAGGGATTTCTTCATTGCTGGGGAGAGTTATGCAGGGCATTATGTTCCTGAACTTGCACATACTATTCTCTACCATAACAAGAAGGCCAACAAAACAATCGTTAACCTTAAAGGAATACTGATTGGGAATGCAGTGATAAACGATGAAACAGACGATGCTGGAATGTACGATTTTCTTGCAAGCCATGCAATAATCTCAGACAATGTTGCACACGATATCAACACATATTGTGATCATAAGTCTTCAGATCCTTCCGATCAGCGTAGCCTCCAGTGCGATACAGCATGGGATGCATTTTATAGGGCTACTCGTTTCATTGATATCTACAACATCTATGCTCCACTTTTTTGCCGCAATGAAAGCCTCACAAAACGGCCCAAGAAGCACTCTCTTGTTGCTGATCCGTGCAGTGATAATTATGTGATTGCCTATCTTAACCGGGCAGAGGTTCAAGAGGCCATCCATGCGAATGTTACCAAACTCAAGTATGACTGGCAACCTTGCAGTGGTGTCATGGGCAGGTGGGGTGACTCCCCTTCAACCATGCTTCCCCTTCTACATGAATTCCTTCACAACGGACTAAGGGTCTGGATTTTCAGTGGTGACATAGATGGAAGGGTGCCTGTTACTTCAACAAAGTATTCACTTAAGAAGATGAACCTTTCTGTTGAAACTGCTTGGCATCCTTGGTATCTGTTTGCAGAGGCTGGTGGGTATACAGAAGTGTACAAGGGAGGCTTAACTTTTGCGACACATATATCAGATACTATAGGTGTTGGTGTTGGTGTTGGCAATGGTGGTGGAGGAGGAGTAGTTTGGGTTGGGGGAGGGGTTAACAACCCACAACCCTCTGGATCTTCTTCAGAATCAAATCTGGATGGAGCTTACACAGCGCTACAGGCATGGAAATTTGCAATCACTGATGACCCAAAGAAAATTCTAGGAACATGGGTTGGTCCAAATGTGTGTTCTTACAAAGAGGTTTTTTGTGATTTTACTGAAGATGAAATGGGTGCATCTGCATCAGCATTCTCTGTAGTTGCAAGCATGGATCTCAACCATGCAAATTTTCAAGGAACTCTTGTCAAAGAGCTATTTTTACTCACTGACATGTCCCTTTTCCACCTTAACAGTAACAGTTACTTCTCTAGGACAATCCCTCAAGAACTCTTCTACAAGAATCTTGATGCACTGTTTCTCAACAAACAATCAATTTAA 1881 0.4327 MGKACSWSLISIFIIILSCCVSEIHGNKQGRALDKFFKAKFKAGSQINRGHFEAPEIVHEAATATAADVGSQAGLKEKDRIVSLPGQPKVNFSQYGGYVTVNHLAGRAYYYYFVEAQTSKETKPLLLWLNGGPGCSSLAYGAMQELGPFRVNSDGRTLYLNRYRWNHAANVLFLESPTGVGFSYSNRSSDYADYYNDDKKTAADNYVFLVNWLERFPEYKKRDFFIAGESYAGHYVPELAHTILYHNKKANKTIVNLKGILIGNAVINDETDDAGMYDFLASHAIISDNVAHDINTYCDHKSSDPSDQRSLQCDTAWDAFYRATRFIDIYNIYAPLFCRNESLTKRPKKHSLVADPCSDNYVIAYLNRAEVQEAIHANVTKLKYDWQPCSGVMGRWGDSPSTMLPLLHEFLHNGLRVWIFSGDIDGRVPVTSTKYSLKKMNLSVETAWHPWYLFAEAGGYTEVYKGGLTFATHISDTIGVGVGVGNGGGGGVVWVGGGVNNPQPSGSSSESNLDGAYTALQAWKFAITDDPKKILGTWVGPNVCSYKEVFCDFTEDEMGASASAFSVVASMDLNHANFQGTLVKELFLLTDMSLFHLNSNSYFSRTIPQELFYKNLDALFLNKQSI 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g02532 626 ProSitePatterns Serine carboxypeptidases, serine active site. 226 233 IPR018202 GO:0004185
Aip08g02532 626 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Aip08g02532 626 Gene3D - 357 393 - -
Aip08g02532 626 Gene3D alpha/beta hydrolase 75 338 IPR029058 -
Aip08g02532 626 PRINTS Carboxypeptidase C serine protease (S10) family signature 161 173 IPR001563 GO:0004185|GO:0006508
Aip08g02532 626 PRINTS Carboxypeptidase C serine protease (S10) family signature 174 184 IPR001563 GO:0004185|GO:0006508
Aip08g02532 626 PRINTS Carboxypeptidase C serine protease (S10) family signature 212 237 IPR001563 GO:0004185|GO:0006508
Aip08g02532 626 PANTHER CARBOXYPEPTIDASE 12 472 - -
Aip08g02532 626 SUPERFAMILY alpha/beta-Hydrolases 81 473 IPR029058 -
Aip08g02532 626 Gene3D - 403 498 - -
Aip08g02532 626 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 12 472 IPR001563 GO:0004185|GO:0006508
Aip08g02532 626 Gene3D Ribonuclease Inhibitor 516 626 IPR032675 -
Aip08g02532 626 Pfam Serine carboxypeptidase 85 472 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g02532 Aip-Chr8 107886881 107896515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g02532 504 622 Leucine-rich Repeat extension Gene Families AT3G24480 36.145 1.33e-20 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g02532 K16297 - gmx:100783864 629.787