Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g02503 ATGGCTGGAACAGTGGATCTTATTGCTGATATCAATGCTACCAAGCTTTCTTGGTCATTGGTTGTGGGGGTGGTTCGATTGTATGAGTTCCCGAGCCAGTGGAATGAAAACAAGGTGTTCAGCTTGGAGATGGTATTACAAGATGTGAAGGGTGATAGGATTCATGCAACCATCTCCAAACCTGCGTTGGAGGCATTCAGACACCAAATAAAGGAGCATGCTATTTACAAAATGCAGAATTTTATTGTTACAACTAATAATGGCAAAGTTAGGACAACTCCACATAAGTACAAGCTCAGTTTTTATACAAAGACTGAGGTGATGCTCCAACCAATTGAGACATTTGCTTTTAATCCTTTTAAGTTTCGTCCTTTTGCTGAGCTTGAGTCAAATGGTGCCAGTGATGAAAATCTATTGTTTGATTACATAGGTGAGGTTGTGGGAAAGGAAGAGGCCAGGGGAATTATCACACGCACGGGTCACCAAAGCAAGCGTATTGCTCTGCAGTTGGAGGACCTAGAGAAGAATAAAATTAAGTGTACATTATTTGGAGAGTTGGTTGACCAAGTGCTTCCACAACTTGAACGAGATGACGGGGAACCTTTCATATTGGTGGTCCAACTTTTTAAAACTAATGTCTATTTGAATTCAGTGAATATTCAAAGTGCCTACTATGTCTCCAAAGTTTACTTCAATCCAAATCTGACTGAGATAAATGAGTTCAAGCAAAGGTTGAATATGGATATTATTTCCCCTTCACAATGCATCACTCAACTTCAGACCCAACCTCAATACTCTGCCACGGATGAGATCAATGCAGGCATTGTTCCATTGAAGACTATAGAGGAGGTCCTCAATATGCAACAGGTGAGGTATAGGCTACAAATAATTGTTACTGATGGAACTGGGTGTCTAAAGCTCATTGTGTGGAACAAAGAAGCAGAGCAGATGGTGGGAAAGCCTGCTGACAAAGTTAACGAGATATGTATGTTGGAAAAGACTAACTCATACCCAAAATACTTGGATAATGTTATTGACAAAAGATTCTTATTCAAACTGAACATTACATACAAGAATATAAATGCCATTGAGGGGGTATACAGTGTAACCAAGCTTTCAGATGAGGACTTACTCATATCGAGCCTCGGGTGTGCCAGCTCTTCTGTTGAAGCCTCTACTTCCCAACTAATGGGTCATACCTCTCTAACTGAGACAGAAGATGATAGCAATGCCCACGGGGTAGTTTCTCTTTCGAAGGACTCTGCTGTGGAAAGCAATGGTGATAGCTCTTATCAAACTCCAGCAAAGAGGTCATCCCCTGATACAGTTGATGGATGCATAGGAGAAGCAATTGTCTCTGCAGATGCACAAGCATCGGCTAACAAGACCTTTAGGCGGAATTCTGGAAAAAAAAAGATGGAGTAA 1425 0.4112 MAGTVDLIADINATKLSWSLVVGVVRLYEFPSQWNENKVFSLEMVLQDVKGDRIHATISKPALEAFRHQIKEHAIYKMQNFIVTTNNGKVRTTPHKYKLSFYTKTEVMLQPIETFAFNPFKFRPFAELESNGASDENLLFDYIGEVVGKEEARGIITRTGHQSKRIALQLEDLEKNKIKCTLFGELVDQVLPQLERDDGEPFILVVQLFKTNVYLNSVNIQSAYYVSKVYFNPNLTEINEFKQRLNMDIISPSQCITQLQTQPQYSATDEINAGIVPLKTIEEVLNMQQVRYRLQIIVTDGTGCLKLIVWNKEAEQMVGKPADKVNEICMLEKTNSYPKYLDNVIDKRFLFKLNITYKNINAIEGVYSVTKLSDEDLLISSLGCASSSVEASTSQLMGHTSLTETEDDSNAHGVVSLSKDSAVESNGDSSYQTPAKRSSPDTVDGCIGEAIVSADAQASANKTFRRNSGKKKME 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g02503 474 SUPERFAMILY Nucleic acid-binding proteins 289 376 IPR012340 -
Aip08g02503 474 CDD RPA1_DBD_A_like 19 107 - -
Aip08g02503 474 PANTHER BNAC07G49340D PROTEIN 27 288 - -
Aip08g02503 474 SUPERFAMILY Nucleic acid-binding proteins 7 111 IPR012340 -
Aip08g02503 474 Gene3D - 251 381 IPR012340 -
Aip08g02503 474 PANTHER REPLICATION FACTOR A 1, RFA1 27 288 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aip08g02503 474 Gene3D - 115 249 IPR012340 -
Aip08g02503 474 CDD RPA1_DBD_B_like 141 245 - -
Aip08g02503 474 Pfam Domain of unknown function DUF223 43 109 IPR003871 -
Aip08g02503 474 MobiDBLite consensus disorder prediction 419 444 - -
Aip08g02503 474 MobiDBLite consensus disorder prediction 419 439 - -
Aip08g02503 474 Gene3D - 4 108 IPR012340 -
Aip08g02503 474 SUPERFAMILY Nucleic acid-binding proteins 120 250 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g02503 Aip-Chr8 106842918 106845426 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g02503 8 242 Core DNA Replication Machinery Family AT2G06510 21.074 1.07e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g02503 - - adu:107463979 652.129