Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g02487 ATGGTGAATGCAGAGAGGAGAGGGAAAGCTTCTGTGGAGCTCAAGCCGATCTCCACTGTCATCTCCTCCTTTCTCCAAATCATGAAAACTCGAGGCTATATCAAGAACTTCGAAGTTTATGATCCGCATAGAGTGGGCAGGATAACAGTTGAATTGCAAGGTAGGATTAATGATTGCAAGGCACTTACATATCGACAAGACATCAAGGCGAAGGATATTGAAGCCTACAGAATTCGCACTCTCCCAACGCATCAGTGGGGTTATGTTGTGATTACGACTCCTGATGGTGTTTTGGATCATGAAGAGGCCATTAGAAGGAATGTGGGTGGACAGGTTCTTGGTTATTTTCACTAG 354 0.4463 MVNAERRGKASVELKPISTVISSFLQIMKTRGYIKNFEVYDPHRVGRITVELQGRINDCKALTYRQDIKAKDIEAYRIRTLPTHQWGYVVITTPDGVLDHEEAIRRNVGGQVLGYFH 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g02487 117 PANTHER 40S RIBOSOMAL PROTEIN S15A 1 117 IPR000630 GO:0003735|GO:0005840|GO:0006412
Aip08g02487 117 SUPERFAMILY Ribosomal protein S8 2 117 IPR035987 GO:0003735|GO:0005840|GO:0006412
Aip08g02487 117 Gene3D - 1 56 - -
Aip08g02487 117 ProSitePatterns Ribosomal protein S8 signature. 87 104 IPR000630 GO:0003735|GO:0005840|GO:0006412
Aip08g02487 117 PANTHER 40S RIBOSOMAL PROTEIN S15A-5 1 117 - -
Aip08g02487 117 Gene3D - 57 117 - -
Aip08g02487 117 Pfam Ribosomal protein S8 2 115 IPR000630 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g02487 Aip-Chr8 106459229 106460048 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g02487 1 117 Cytoplasmic Ribosomal Protein Gene Family AT4G29430 83.761 4.36e-74 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g02487 K02957 - jre:108989768 221.861