Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g02458 ATGTCATCGACGACTACACCATGCGCTGCATGTAAGTTCCTTCGTCGGAAGTGCACACCGGAGTGCATTTTTGCACCGTACTTCCCAGCGAACAACCCACAGCGCTTCGAATGTGTCCACCGTGTCTTCGGCGCCAGCAACGTCGGCAAGATCCTCAACGAGCTACCTCCATCCCAGCGCGAGGAAGCGGTGGAGTCCCTTGCGTTCGAGGCGGAAGCACGCCAATGCGACCCGGTCTATGGCTGCACCCTCCAAGTCTGCATCCTACAGAAGAAACTCCGCCAGAGACGTGCCCTCCTCGCTAATGCCAAGAGAGAACTTAGCGCCTACATCAACCCACAAGCCATTCAAGGTCCATTCAACCCTCAGGAAAAGCCTCTGTCTTCACCTGCCGACCATTTAGGTCCTCCCTGCAGTCCGAATGTTGTACAGTATTCACCCATTTTAGGCCCATCCTACGGTCTAGATGTTGTACAGTCTTCAGCCCATTTGGGCCTATCTGACTGCCCAGATGATGCACCGTTTTTTATGCCAGCTATACAGCATAATGGGTCATTGGGTGGTGGTGGTGCTGCTGACCCGAAGCTGGACCCAGGGCAGCAAGAGTTGTTGGAGGCCCAGCAACTTGCTGCTGCTGCGGCAATCCGAGAACAGCAGCAAGCTATAATGATGAGGAATTATGTCCAGCAACAGCAACAGGAGTATCTAAGACACAATGCTGCTGCTGGGATTGAACCTGTTGCGGCTGCGGCGGCCCTACGGCGATGTCAGTGGATGTGGAGTGTTTGGCCACATGGGTGCATCTTCAGGTGGTCAAGGAGGTGA 825 0.5467 MSSTTTPCAACKFLRRKCTPECIFAPYFPANNPQRFECVHRVFGASNVGKILNELPPSQREEAVESLAFEAEARQCDPVYGCTLQVCILQKKLRQRRALLANAKRELSAYINPQAIQGPFNPQEKPLSSPADHLGPPCSPNVVQYSPILGPSYGLDVVQSSAHLGLSDCPDDAPFFMPAIQHNGSLGGGGAADPKLDPGQQELLEAQQLAAAAAIREQQQAIMMRNYVQQQQQEYLRHNAAAGIEPVAAAAALRRCQWMWSVWPHGCIFRWSRR 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g02458 274 Pfam Lateral organ boundaries (LOB) domain 7 103 IPR004883 -
Aip08g02458 274 PANTHER LOB DOMAIN-CONTAINING PROTEIN 32-RELATED 3 235 - -
Aip08g02458 274 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Aip08g02458 274 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 3 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g02458 Aip-Chr8 105419443 105420267 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g02458 1 116 AS2 family AT5G66870 62.931 6.43e-48 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Aip08g02458 LOB 4.8e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g02458 - - aip:107613313 528.094