Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g02439 ATGTCTTCTCATCACCATCAATGCCAGAACAACATTATGTTGCATTTCCGTTTCTTCAAGGCTATACTCAAAACTAATCTTCAAAGGATTAAAATACCCAATAAGTTTTCAAGGAGACATGGAAGCGCTCTTTCAAATCCAGTGTTTCTTAAGCCTCCAGATGGCACTCTATGGAAAGTGTATTGGACAAAAAAGAATAGTGATGAAGTTTGGTTTGTAAAAGGATGGAAGGAATTTACCAAAAACTACTCTCTTAATGAAGGACATTTAGTTGTGTTTAAATATGAAGAAACTTCTCAGTTTGATGTAATCATACTTGAGATAAATGATCTAGAAATAGATTATTCCAAATATGAGACTGTGAATAGAAAGGGCAAATGTGACCAGAGAGATGAGAAAACAGTTGGAATCTTAAAGGAAATCCCTGTAAAAAATAATGACGCTGGAAAAAGATTGACATTGTTTTCTCCTCAGCCTCATATGAAAGTCAGAGGTGAGAGCTCTATTCGAAGAAGAACATCATCTTTGAATTGGCCAAAGGAACTTAAAGCTCAGGAAATAGCTCAGAAATTCATCTCCTATAACCCTTTCTTCACACTGTTCATAAAGCCAAGTTACCTCACAGAATACCAAGTGAATGTACCGACTTTGAAAGGTTACATTGAGGACAAGGTGAAGGACGTGGCGCTTAAGGTTGGGGAAAGACAATGGCAAGTAAAGTTGCTCCCTTGTCGCAACTCAGCTCGCCGCCTCTCAGGTGGTTGGTCCTTGTTTGTCCATGAGAATGGATTGCAAGCTGAAGATGTTTGTGTCTTTGAACTGATTAACATGGAAGATTCAGTTTTTAAGGTTCATGTTTTCAAAAGGTAG 870 0.3782 MSSHHHQCQNNIMLHFRFFKAILKTNLQRIKIPNKFSRRHGSALSNPVFLKPPDGTLWKVYWTKKNSDEVWFVKGWKEFTKNYSLNEGHLVVFKYEETSQFDVIILEINDLEIDYSKYETVNRKGKCDQRDEKTVGILKEIPVKNNDAGKRLTLFSPQPHMKVRGESSIRRRTSSLNWPKELKAQEIAQKFISYNPFFTLFIKPSYLTEYQVNVPTLKGYIEDKVKDVALKVGERQWQVKLLPCRNSARRLSGGWSLFVHENGLQAEDVCVFELINMEDSVFKVHVFKR 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g02439 289 CDD B3_DNA 197 288 IPR003340 GO:0003677
Aip08g02439 289 SMART B3_2 197 288 IPR003340 GO:0003677
Aip08g02439 289 SMART B3_2 18 109 IPR003340 GO:0003677
Aip08g02439 289 Gene3D - 13 109 IPR015300 -
Aip08g02439 289 ProSiteProfiles B3 DNA-binding domain profile. 15 109 IPR003340 GO:0003677
Aip08g02439 289 Pfam B3 DNA binding domain 206 289 IPR003340 GO:0003677
Aip08g02439 289 Pfam B3 DNA binding domain 25 102 IPR003340 GO:0003677
Aip08g02439 289 CDD B3_DNA 16 106 IPR003340 GO:0003677
Aip08g02439 289 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 16 288 - -
Aip08g02439 289 Gene3D - 178 289 IPR015300 -
Aip08g02439 289 SUPERFAMILY DNA-binding pseudobarrel domain 195 288 IPR015300 -
Aip08g02439 289 PANTHER B3 DOMAIN-CONTAINING 16 288 - -
Aip08g02439 289 ProSiteProfiles B3 DNA-binding domain profile. 235 289 IPR003340 GO:0003677
Aip08g02439 289 SUPERFAMILY DNA-binding pseudobarrel domain 16 116 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g02439 Aip-Chr8 104476865 104478832 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g02439 18 288 B3 DNA Binding Superfamily AT3G18990 28.190 6.32e-29 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aip08g02439 B3 6.7e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g02439 - - lang:109346569 277.715