Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g02427 ATGTCTAGGAGGGTTCTTTGTAAATTCTTTGCTCATGGAGCATGTCTGAAAGGGGAGCATTGTGAATATTCTCATGACTGGAATGATCCTCCGAATTTGATATGCACATTTTATCAGAAAGGAGTCTGTGCTTATGGTAGTCGTTGCAGATATGATCATGTCAAAGTTTCTCGACCACAATCCTCGACGGCTTCTTCCTCAATAACTGAACAACGGCCCCTGGTTTCAGATGATGTTGTATTTGGTAATATTGGAATTACATCAAATGGTATTGCTGCAGCTCCTGAGTTTTCTCCTTCCAGAAGTCCTTCCCTTATTCCCAGCATACCTGCTTGGAATCAAGAACAGCAGCAGTATCATGAATTTGTAGGGGACGATGATGTTCGTCAATCTAGAATTACTTCACCTGCTGAGATTCCAATCTGTTCATTTGCTGCGGCTGGCAACTGTCCACGAGGGGAAACTTGTCCTCATATCCATGGAGATTTGTGTAGTACTTGTGGAAAAAACTGCTTGCATCCTTTTCGACCTGAGGAAAGAGCAGAACATATGAAGAGTTGTGAAAATAAGCAAAAGCATCTTGAGGCATTGAAACGTAGTCAAGAAATTGAATGCAGTGTGTGCCTTGAGCGTGTTCTTTCAAAGCCTACTGCAGCAGAACGAAAGTTTGGGCTGTTATCTGAATGTGACCATCCGTTCTGCATATCATGTATTAGAAATTGGCGTAGTAGCAACCCAACATTGGGGATGGATGTCAATAGTACATTGAGGGCATGTCCTATCTGTCGCAAGCTATCTTACTTTGTCATTCCAAGTGTCATTTGGTATTCTACACATGAAGAAAAAATGGAAATCGTTGACAGCTACAAGGCAAAGCTCAAGTCCATAGATTGCAAACATTTTGACTTTGGCGATGGGAACTGTCCTTTTGGAACCAGTTGTTTCTACAAGCATGCATATAGAGATGGTCGGCTTGAGGAGGTAGTTCTGCGACATCTTGGAGCTGCAGATGGCGATACAGTGATTGCCAAAGATATCAGGCTGTCAGATTTCCTAGCTAGCATGCATTTACAATGA 1077 0.4243 MSRRVLCKFFAHGACLKGEHCEYSHDWNDPPNLICTFYQKGVCAYGSRCRYDHVKVSRPQSSTASSSITEQRPLVSDDVVFGNIGITSNGIAAAPEFSPSRSPSLIPSIPAWNQEQQQYHEFVGDDDVRQSRITSPAEIPICSFAAAGNCPRGETCPHIHGDLCSTCGKNCLHPFRPEERAEHMKSCENKQKHLEALKRSQEIECSVCLERVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSNPTLGMDVNSTLRACPICRKLSYFVIPSVIWYSTHEEKMEIVDSYKAKLKSIDCKHFDFGDGNCPFGTSCFYKHAYRDGRLEEVVLRHLGAADGDTVIAKDIRLSDFLASMHLQ 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g02427 358 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 179 300 IPR013083 -
Aip08g02427 358 ProSiteProfiles Zinc finger C3H1-type profile. 29 56 IPR000571 GO:0046872
Aip08g02427 358 ProSitePatterns Zinc finger RING-type signature. 229 238 IPR017907 -
Aip08g02427 358 Gene3D - 1 32 - -
Aip08g02427 358 ProSiteProfiles Zinc finger C3H1-type profile. 1 28 IPR000571 GO:0046872
Aip08g02427 358 Pfam CCCH-type zinc finger 34 53 IPR041367 -
Aip08g02427 358 ProSiteProfiles Zinc finger C3H1-type profile. 136 163 IPR000571 GO:0046872
Aip08g02427 358 SUPERFAMILY CCCH zinc finger 32 53 IPR036855 GO:0046872
Aip08g02427 358 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 69-LIKE 1 356 - -
Aip08g02427 358 SMART c3hfinal6 292 320 IPR000571 GO:0046872
Aip08g02427 358 SMART c3hfinal6 31 55 IPR000571 GO:0046872
Aip08g02427 358 SMART c3hfinal6 137 162 IPR000571 GO:0046872
Aip08g02427 358 SMART c3hfinal6 2 27 IPR000571 GO:0046872
Aip08g02427 358 CDD RING-HC_MKRN 205 263 - -
Aip08g02427 358 Pfam Zinc finger, C3HC4 type (RING finger) 205 262 IPR018957 GO:0046872
Aip08g02427 358 SUPERFAMILY RING/U-box 193 269 - -
Aip08g02427 358 Pfam RNA-binding, Nab2-type zinc finger 297 319 - -
Aip08g02427 358 Pfam RNA-binding, Nab2-type zinc finger 6 25 - -
Aip08g02427 358 ProSiteProfiles Zinc finger RING-type profile. 205 263 IPR001841 -
Aip08g02427 358 Coils Coil 184 204 - -
Aip08g02427 358 PANTHER MAKORIN-RELATED 1 356 IPR045072 -
Aip08g02427 358 ProSiteProfiles Zinc finger C3H1-type profile. 292 321 IPR000571 GO:0046872
Aip08g02427 358 Gene3D - 33 164 - -
Aip08g02427 358 SUPERFAMILY CCCH zinc finger 4 26 IPR036855 GO:0046872
Aip08g02427 358 SMART ring_2 205 262 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g02427 Aip-Chr8 103757435 103759866 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aip08g02427 zf-C3HC4 2.9e-07 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g02427 K15687 - gmx:100787817 635.18