Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g02386 ATGAGGGAGAGGCGAGCAGAGACCAGAGATCGCAGACTGGAGAGGCGAGCCGGCGAGGATAGTGACGGTGAGAACAGTGACGTTGAGAAGAAAAGTGGGAGCGACGCCGATGTGAGCTCGATGAGGGACAGCGATAAGGTGACCGACGGTGGCTGTGACGACGCCGCCGGCTGCAGTGATGGGCGAGCTTTGACGGCGACTGACTGGTGGTCTGGTGCAGCTGAGCAGAGGCGATGTCTAAATGCACAGAAAGTCTTACTTCCTGATGACCATATTCAGGTGGATTTGACACCGCACATGCAGCTGCTCGGTGAAGTGGCAATTAAGTTCCGTGGAGTGGAGGCTGACATTAACTTCAACATAGAAGACTACGAAGAAGACTTGAACACTGGGTTTCCAAGAGGAAGTTCCAAATATAGAGGCGTTACCTTGCACAAGTGTGGAAGATGGGAGGCTTGTATGGGCCAATTTCTAGGCAAAAAGTACGTTTATCTGGGCCTCTTTGATACTGAGATTGAAGCTGCCAGATTCTCTTTACAAGATGGAGTAAGAAACAAAGATGTTGGAACAAGTTTTCGGGATGAAACTCACACAAGAGACCAAGAAACTAAGGCAGGCTTGTTTTAA 627 0.4992 MRERRAETRDRRLERRAGEDSDGENSDVEKKSGSDADVSSMRDSDKVTDGGCDDAAGCSDGRALTATDWWSGAAEQRRCLNAQKVLLPDDHIQVDLTPHMQLLGEVAIKFRGVEADINFNIEDYEEDLNTGFPRGSSKYRGVTLHKCGRWEACMGQFLGKKYVYLGLFDTEIEAARFSLQDGVRNKDVGTSFRDETHTRDQETKAGLF 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g02386 208 PANTHER FLORAL HOMEOTIC PROTEIN APETALA 2-LIKE ISOFORM X1 106 129 - -
Aip08g02386 208 MobiDBLite consensus disorder prediction 1 52 - -
Aip08g02386 208 MobiDBLite consensus disorder prediction 188 208 - -
Aip08g02386 208 SUPERFAMILY DNA-binding domain 137 176 IPR016177 GO:0003677
Aip08g02386 208 MobiDBLite consensus disorder prediction 1 50 - -
Aip08g02386 208 Pfam AP2 domain 137 176 IPR001471 GO:0003700|GO:0006355
Aip08g02386 208 Gene3D AP2/ERF domain 137 178 IPR036955 GO:0003700|GO:0006355
Aip08g02386 208 ProSiteProfiles AP2/ERF domain profile. 138 176 IPR001471 GO:0003700|GO:0006355
Aip08g02386 208 MobiDBLite consensus disorder prediction 188 202 - -
Aip08g02386 208 CDD AP2 137 176 IPR001471 GO:0003700|GO:0006355
Aip08g02386 208 PANTHER FLORAL HOMEOTIC PROTEIN APETALA 2-LIKE ISOFORM X1 130 177 - -
Aip08g02386 208 SMART rav1_2 138 193 IPR001471 GO:0003700|GO:0006355
Aip08g02386 208 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 106 129 - -
Aip08g02386 208 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 130 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g02386 Aip-Chr8 101996009 101999946 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g02386 108 192 AP2-EREBP Transcription Factor Family AT4G36920 63.810 2.04e-36 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip08g02386 AP2 1.8e-06 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g02386 K09284 - gmx:100792442 132.88