Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g02367 ATGCCAGCTTTGATGTCAGCTAGGTTTCTTCTTCTTGTTGGAGAGTCCTTCCCCATTAGAAGGGCATTGGCTACTCATAAAAATGCTTCTTCTTTGTTGCACACAAGTATTCATTGTATGAGCCAAGTGGAACCACCAAATCATGGTTCCTTAACCCTCTCAAGTGTTGGTTTCCAAAGTGAAGTTGATAAACCAATTAACAAAGGTGGCAAGTCTAGCAGTAAGGTAAAGCCATTGTTGAGTTCATCCCCTGGGTCCCTTAAGAGCAAAGGCATAGGGAAACCTATTGGTTCCAGTGAGAAGAAGAAAGCGTTTGCGATTGTTGAGAGGAAGAAACAACAAATTGAGGCTGCCCCATTTGCAGCGAAATCGTTCTCTGAACTTGGGTTGCCCCTTGTTCTGATTGAGAGATTGGAGAAAGAGGGGTTCAGTGTTCCAACTGAAGTTCAGTCTGCAGCTGTTCCTACCATTCTGCAGAACCATGATGTCATAATTCAGTCTTATACGGGTTCGGGGAAGACATTGGCTTATCTGCTTCCTATACTATCATCTATTGGTCCACTGATGAACAATGTTTCCAAGAGTGACAGTGGTGGTGATTCTGGTGGGAAAATGGGAATAGAAGCAGTGGTTGTTGCTCCCTCTAGGGAGCTAGGGATGCAGATAGAAGAAGCTCTCAAGAAGAATAAACCTGCCATTGTTGTTGGCACACCTGGTAGGATAGCGGAACTTAGTGCAGCAGGGAAGCTTCGGACACATGGCTGTCGCTATTTGGTATTGGATGAAGTTGATGAGCTCTTGTCATTCAATTTTCGGGAGGACATGCACCGGATATTGGAGCATGTAGGCAGGAGATCAGGTGCAGACCCGGATCCAAATGTTAAAAGGACTGAGCGTCAGTTAATTATGGTGTCTGCAACTGTGCCGTTTTCTGTTGTAAGAGCAGCGAGGAGCTGGGGATGTGATCCACTTCTCGTCCAAGCTAAGAAAGTTATCCAGCTTGATACTGTCTCGCCTTTGGGCCCTATCAATTTGTCAAGGCCTTCAGTCGGTTCTACTCCAGACCCAACTAAGCCATCTCAGGCATCAGTAGAGAGTTTGCCTCCGGCTTTGGAACACTATTATTGTGTAGCGAGGTTACAGCACAAGGTCGATACCATGCGAAAGTGTATTCATGCCCTGGATGCAAAAGTTGTAATAGCTTTCAGGAACAACAGTAAGCAACTAAAGGATGTCGTCTTCAAGCTGGAGGCCCGTGGAATGAAAGCGGCAGAGTTGCATGGGGATCTTGGGAAGCTTGCTAGGTCATCAACTTTGAAGAAATTCAAGAATGGCGAGGTGAGAGTTCTGGTGACAAATGAATTATCAGCTAGGGGTTTGGATGTGGCAGAATGTGATCTCGTGGTTAATCTGGACTTACCTACGGATTCAACTCACTATGCACACCGAGCTGGCCGAACTGGTCGGCTTGGTAGGGATGGTACAGTGCTAACCATATGTGAAGAGTCCGAAGTTTTTATTGTGAAGAAAATGGAGAAGCAGCTTGGAGTAACTGTGGCGTTCTGCGATTTTGTTGAGGGAAAGATGCTTGTCAACCAAGAAGAGAAAGCACTCAGCACTTCAAGAAAATGA 1632 0.4577 MPALMSARFLLLVGESFPIRRALATHKNASSLLHTSIHCMSQVEPPNHGSLTLSSVGFQSEVDKPINKGGKSSSKVKPLLSSSPGSLKSKGIGKPIGSSEKKKAFAIVERKKQQIEAAPFAAKSFSELGLPLVLIERLEKEGFSVPTEVQSAAVPTILQNHDVIIQSYTGSGKTLAYLLPILSSIGPLMNNVSKSDSGGDSGGKMGIEAVVVAPSRELGMQIEEALKKNKPAIVVGTPGRIAELSAAGKLRTHGCRYLVLDEVDELLSFNFREDMHRILEHVGRRSGADPDPNVKRTERQLIMVSATVPFSVVRAARSWGCDPLLVQAKKVIQLDTVSPLGPINLSRPSVGSTPDPTKPSQASVESLPPALEHYYCVARLQHKVDTMRKCIHALDAKVVIAFRNNSKQLKDVVFKLEARGMKAAELHGDLGKLARSSTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSTHYAHRAGRTGRLGRDGTVLTICEESEVFIVKKMEKQLGVTVAFCDFVEGKMLVNQEEKALSTSRK 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g02367 543 Gene3D - 96 226 IPR027417 -
Aip08g02367 543 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 22 224 - -
Aip08g02367 543 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 223 519 - -
Aip08g02367 543 Gene3D - 368 524 IPR027417 -
Aip08g02367 543 MobiDBLite consensus disorder prediction 64 97 - -
Aip08g02367 543 CDD SF2_C_DEAD 371 500 - -
Aip08g02367 543 Pfam DEAD/DEAH box helicase 226 312 IPR011545 GO:0003676|GO:0005524
Aip08g02367 543 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 123 151 IPR014014 GO:0003724
Aip08g02367 543 Pfam Helicase conserved C-terminal domain 390 491 IPR001650 -
Aip08g02367 543 SMART helicmild6 410 491 IPR001650 -
Aip08g02367 543 Gene3D - 227 334 IPR027417 -
Aip08g02367 543 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 386 530 IPR001650 -
Aip08g02367 543 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 154 326 IPR014001 -
Aip08g02367 543 CDD DEADc 134 327 - -
Aip08g02367 543 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 208 513 IPR027417 -
Aip08g02367 543 MobiDBLite consensus disorder prediction 345 364 - -
Aip08g02367 543 SMART ultradead3 142 346 IPR014001 -
Aip08g02367 543 MobiDBLite consensus disorder prediction 74 88 - -
Aip08g02367 543 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 22 224 - -
Aip08g02367 543 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 223 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g02367 Aip-Chr8 100936914 100938629 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g02367 124 519 Eukaryotic Initiation Factors Gene Family AT3G19760 23.697 8.28e-42 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g02367 - - aip:107613119 980.704